# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	8.85e-05	d.98.1.1	67267
2g2uB	165	9.85e-05	d.98.1.1	134541
2o8xA	70	6.279		
1r69	69	12.56		
1mt6A	280	14.33	b.76.2.1,b.85.7.1	79446,79447
2h27A	73	17.25	a.4.13.2	135993
1or7A	194	18.94	a.4.13.2,a.177.1.1	87332,87333
1adrA	76	21.97	a.35.1.2	17042
1utxA	66	23.16	a.35.1.3	108034
2ef8A	84	23.70		
1cp3A	277	23.75	c.17.1.1	30992
3bemA	218	26.80		
2bnmA	198	28.80	a.35.1.3,b.82.1.10	128835,128836
2b5aA	77	32.74	a.35.1.3	127882
1lj9A	144	38.49	a.4.5.28	78035
1yqgA	263	40.96		
1jkoC	52	41.99	a.4.1.2	66809
1y7yA	74	42.50	a.35.1.3	122729
1lnwA	147	43.95	a.4.5.28	78104
1ic8A	194	47.14	a.4.1.1,a.35.1.1	76740,76741
2d5vA	164	48.41		
3ceaA	346	50.31		
2nrrA	159	53.67		
2odvA	235	55.13		
1fs1B	141	57.56	a.157.1.1,d.42.1.1	19252,38664
2i5gA	325	57.74		
1vfrA	218	59.12	d.90.1.1	40247
1ufmA	84	60.12	a.4.5.47	107816
2ho3A	325	61.79		
2g17A	337	61.90	c.2.1.3,d.81.1.1	134512,134513
1tygB	87	63.05	d.15.3.2	107455
2h36X	112	63.57		
2iskA	230	69.56		
1fqvD	149	70.76	a.157.1.1,d.42.1.1	19263,38667
2h0uA	217	72.08		
2rdpA	150	72.96		
2bf5A	98	73.62	d.137.1.1	128405
2fa1A	160	73.99	d.190.1.2	133182
2cxyA	125	74.00		
2o35A	105	74.39		
1noxA	205	74.60	d.90.1.1	40242
1r69A	69	76.04	a.35.1.2	17028
1lliA	92	78.80	a.35.1.2	17025
1gcuA	295	79.07	c.2.1.3,d.81.1.4	30063,39978
1sedA	117	81.58	a.219.1.1	105449
2fbhA	146	82.45	a.4.5.28	133245
1vkiA	181	82.73	d.116.1.1	108664
2dvwB	83	85.01		
2astA	159	86.45		
2amyA	246	86.62	c.108.1.10	127026
1nstA	325	86.98	c.37.1.5	31951
2ppxA	99	88.31		
2fa5A	162	88.90