# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	7.42e-05	d.98.1.1	67267
2g2uB	165	8.53e-05	d.98.1.1	134541
2o8xA	70	4.509		
1r69	69	11.90		
1cp3A	277	14.73	c.17.1.1	30992
2h27A	73	14.75	a.4.13.2	135993
1adrA	76	16.25	a.35.1.2	17042
1mt6A	280	17.97	b.76.2.1,b.85.7.1	79446,79447
1or7A	194	19.26	a.4.13.2,a.177.1.1	87332,87333
1utxA	66	27.42	a.35.1.3	108034
2g17A	337	29.19	c.2.1.3,d.81.1.1	134512,134513
2ef8A	84	32.58		
2d5vA	164	32.82		
2bnmA	198	35.21	a.35.1.3,b.82.1.10	128835,128836
2b5aA	77	36.78	a.35.1.3	127882
1y7yA	74	36.85	a.35.1.3	122729
2nrrA	159	37.60		
3bemA	218	39.40		
1lj9A	144	39.46	a.4.5.28	78035
1yqgA	263	43.74		
1tygB	87	46.20	d.15.3.2	107455
2cxyA	125	49.74		
1jkoC	52	51.70	a.4.1.2	66809
1ufmA	84	52.75	a.4.5.47	107816
3ceaA	346	57.07		
2amyA	246	58.26	c.108.1.10	127026
2odvA	235	58.63		
1vfrA	218	61.92	d.90.1.1	40247
1gcuA	295	63.25	c.2.1.3,d.81.1.4	30063,39978
1ic8A	194	63.75	a.4.1.1,a.35.1.1	76740,76741
1fs1B	141	64.21	a.157.1.1,d.42.1.1	19252,38664
1z2nX	324	64.73		
2ho3A	325	65.20		
2glxA	332	66.27		
2dvwB	83	67.39		
2h0uA	217	68.89		
1r69A	69	73.13	a.35.1.2	17028
2aqjA	538	73.51		
2fa1A	160	75.40	d.190.1.2	133182
1lnwA	147	75.61	a.4.5.28	78104
1lmb3	92	75.98		
2i5gA	325	77.79		
1qtnA	164	79.34	c.17.1.1	30999
2q1zA	184	81.75		
3b7hA	78	84.43		
1hcrA	52	84.49	a.4.1.2	16020
2o35A	105	86.32		
1fqvD	149	89.32	a.157.1.1,d.42.1.1	19263,38667
2ppxA	99	89.64