# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 6.14e-07 d.98.1.1 134541 1jtgB 165 9.43e-07 d.98.1.1 67267 1wdvA 152 1.758 d.116.1.1 114539 1r69 69 9.446 1l3kA 196 10.05 d.58.7.1,d.58.7.1 73539,73540 1vs3A 249 10.42 2cro 71 11.42 1s6lA 212 11.93 3sxlA 184 12.58 d.58.7.1,d.58.7.1 39173,39174 1ha1 184 13.11 2b5aA 77 13.47 a.35.1.3 127882 2v75A 104 14.17 1ve0A 134 14.93 3b7hA 78 17.01 3bs3A 76 18.64 1v9mA 323 18.84 f.40.1.1 100543 2a6cA 83 19.87 a.35.1.13 126236 1mzbA 136 19.93 a.4.5.42 91497 2qndA 144 20.10 2z0xA 158 20.35 1jkoC 52 20.60 a.4.1.2 66809 2uzcA 88 21.78 3bddA 142 23.53 2o38A 120 25.48 1r69A 69 26.48 a.35.1.2 17028 1vjfA 180 28.41 d.116.1.1 100809 1pdnC 128 28.84 a.4.1.5 16047 1vkkA 154 28.89 d.109.1.2 108669 1y7yA 74 29.05 a.35.1.3 122729 1z2mA 155 31.88 d.15.1.1,d.15.1.1 124387,124388 6paxA 133 31.89 a.4.1.5,a.4.1.5 64758,64759 1tc3C 51 31.92 a.4.1.2 16025 1vkiA 181 33.58 d.116.1.1 108664 2croA 71 35.48 a.35.1.2 17038 1utxA 66 35.55 a.35.1.3 108034 1whbA 157 36.38 c.46.1.4 114639 1b0nA 111 39.46 a.34.1.1,a.35.1.3 17001,17064 2opgA 98 40.05 2h2bA 107 40.80 1twyA 290 44.33 c.94.1.1 112767 1adrA 76 44.75 a.35.1.2 17042 1vhtA 218 45.35 c.37.1.1 100700 1vmjA 151 46.37 d.273.1.1 113679 2i2qA 137 47.28 2pa1A 87 48.68 1iugA 352 50.76 c.67.1.3 90699 2ewtA 71 51.55 2pktA 91 52.39 1u14A 172 54.17 c.51.4.3 107579 2fneA 117 59.14 b.36.1.1 133813 2ef8A 84 60.63 1vfvA 366 62.43 c.37.1.9 108592 1j9iA 68 64.58 a.6.1.5 71619 1zh5A 195 64.86 a.4.5.46,d.58.7.1 125073,125074 2oqkA 117 65.26 1guzA 310 65.95 c.2.1.5,d.162.1.1 65586,65587 1b7fA 168 67.37 d.58.7.1,d.58.7.1 39169,39170 2p6cA 137 69.67 2jqoA 108 69.70 2zd1A 557 69.93 2ywwA 149 70.93 1cfyA 143 71.26 d.109.1.2 40858 1cjgA 62 72.19 a.35.1.5 17112 1lldA 319 72.43 c.2.1.5,d.162.1.1 30177,42144 1wp5A 323 72.58 b.68.10.1 114780 1jj2O 148 75.09 a.94.1.1 63100 2gwfA 157 75.28 c.46.1.4 135802 1i1gA 141 76.65 a.4.5.32,d.58.4.2 65982,65983 1ihjA 98 77.15 b.36.1.1 62382 1gsoA 431 79.23 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 3broA 141 80.10 1je8A 82 80.25 a.4.6.2 77108 2fe3A 145 80.76 2iwoA 120 81.46 2o8xA 70 81.57 2he4A 90 81.94 1oo0B 110 84.35 d.58.7.1 87183 1scmB 145 85.17 a.39.1.5 17304