# List of top-scoring protein chains for T0399.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xxmC	165	0.01572		
1s0wC	165	0.01674	d.98.1.1	98311
2g2uB	165	0.01762	d.98.1.1	134541
2pxgA	118	0.1002		
1zkqA	517	39.75		
1ucrA	78	41.46	a.4.5.45	99188
2fz0A	149	45.92		
1j7jA	178	49.89	c.61.1.1	84131
3c24A	286	65.12		
1e6cA	173	71.92	c.37.1.2	59296
1pknA	530	73.94	b.58.1.1,c.1.12.1,c.49.1.1	27042,29271,33125
1z82A	335	74.40		
1shkA	173	77.62	c.37.1.2	31932
1mqbA	333	79.19	d.144.1.7	91392
2qo9A	373	85.99		
2qodA	373	86.00		
2g50A	530	86.28	b.58.1.1,c.1.12.1,c.49.1.1	134618,134619,134620
1f3wA	530	86.28	b.58.1.1,c.1.12.1,c.49.1.1	64934,64935,64936
1a49A	530	86.28	b.58.1.1,c.1.12.1,c.49.1.1	27026,29255,33109
1f3xA	530	86.29	b.58.1.1,c.1.12.1,c.49.1.1	64958,64959,64960
2qocA	344	86.55		
2qofA	373	86.70		
2pojA	164	86.77		
2qoiA	373	87.06		
1jizA	166	88.03	d.92.1.11	71693
2qooA	373	88.72		
2qolA	373	89.23		
2z2dA	164	89.56