# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.64e-10	d.98.1.1	67267
2g2uB	165	1.80e-10	d.98.1.1	134541
2avtA	378	6.608		
2o8xA	70	7.599		
2h27A	73	8.331	a.4.13.2	135993
1z82A	335	11.83		
1k8kG	151	12.88	a.118.13.1	68313
1wnaA	131	12.88	d.319.1.1	121091
2ijcA	145	13.08	a.152.1.3	137465
2guzA	71	13.66		
1tu3F	79	20.40	h.1.27.2	112644
2o4dA	165	20.60	a.152.1.3	138907
2fbhA	146	21.67	a.4.5.28	133245
2croA	71	26.69	a.35.1.2	17038
1adrA	76	26.79	a.35.1.2	17042
2cro	71	27.35		
1utxA	66	28.55	a.35.1.3	108034
1r69A	69	31.36	a.35.1.2	17028
1vjfA	180	31.89	d.116.1.1	100809
1gq6A	313	32.90	c.42.1.1	70341
2r7dA	469	33.17		
1r69	69	33.32		
1ok7A	366	34.39	d.131.1.1,d.131.1.1,d.131.1.1	103992,103993,103994
2p1mA	163	35.75		
1y7yA	74	35.84	a.35.1.3	122729
2ci1A	275	37.42		
2b5aA	77	39.63	a.35.1.3	127882
1hkqA	132	41.18	a.4.5.10	83555
1j3wA	163	41.80	d.110.7.1	90833
1ituA	369	42.29	c.1.9.7	71423
2dvwB	83	42.86		
1kqqA	139	43.84	a.4.3.1	72885
1sedA	117	44.35	a.219.1.1	105449
1vhtA	218	47.70	c.37.1.1	100700
2grjA	192	48.62		
1yn3A	98	50.13		
2h36X	112	50.18		
2ja9A	175	55.18		
1or7A	194	56.53	a.4.13.2,a.177.1.1	87332,87333
1tltA	319	58.10	c.2.1.3,d.81.1.5	107135,107136
1vd6A	224	59.67	c.1.18.3	119991
1r8eA	278	62.23	a.6.1.3,d.60.1.1	104843,104844
1dgwY	93	62.52		
2ho3A	325	63.98		
1yn5A	103	69.32		
1b0nA	111	69.60	a.34.1.1,a.35.1.3	17001,17064
1vj7A	393	70.33	a.211.1.1,d.218.1.8	100801,100802
2i5gA	325	70.54		
1lc0A	294	71.78	c.2.1.3,d.81.1.4	73823,73824
1vkiA	181	74.87	d.116.1.1	108664
2pywA	420	74.98		
2q73A	100	75.37		
2rffA	111	76.65		
1vs0A	310	77.59		
2fz0A	149	78.23		
1vdhA	249	78.44	d.58.4.10	108523
1gqpA	221	81.07	b.18.1.9	70372
1r71A	178	81.96	a.4.14.1	104823
2gmyA	153	82.55	a.152.1.3	135398
1vz0A	230	83.61	a.4.14.1,d.268.1.1	108929,108930
1jhjA	171	83.88	b.18.1.9	66714
2bzgA	232	84.24	c.66.1.36	129559
2ef8A	84	86.66		
2r1fA	270	89.20