# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	2.47e-11	d.98.1.1	67267
2g2uB	165	2.64e-11	d.98.1.1	134541
1wnaA	131	6.314	d.319.1.1	121091
2ijcA	145	6.809	a.152.1.3	137465
2avtA	378	7.094		
2h27A	73	11.53	a.4.13.2	135993
2o8xA	70	11.64		
2o4dA	165	11.66	a.152.1.3	138907
1tu3F	79	13.78	h.1.27.2	112644
2h36X	112	16.80		
1k8kG	151	17.15	a.118.13.1	68313
1hkqA	132	18.39	a.4.5.10	83555
1vjfA	180	18.79	d.116.1.1	100809
1z82A	335	19.00		
2guzA	71	19.66		
1tltA	319	20.06	c.2.1.3,d.81.1.5	107135,107136
1sedA	117	21.35	a.219.1.1	105449
1ituA	369	30.55	c.1.9.7	71423
1vd6A	224	31.07	c.1.18.3	119991
1r8eA	278	32.13	a.6.1.3,d.60.1.1	104843,104844
1gq6A	313	37.28	c.42.1.1	70341
2p1mA	163	37.64		
2ci1A	275	37.68		
2fbhA	146	37.92	a.4.5.28	133245
1lc0A	294	39.66	c.2.1.3,d.81.1.4	73823,73824
1utxA	66	40.12	a.35.1.3	108034
2ho3A	325	40.63		
1vhtA	218	40.74	c.37.1.1	100700
1vkiA	181	41.42	d.116.1.1	108664
1wdvA	152	41.95	d.116.1.1	114539
1ok7A	366	43.75	d.131.1.1,d.131.1.1,d.131.1.1	103992,103993,103994
2i5gA	325	44.95		
2cro	71	45.89		
2croA	71	46.66	a.35.1.2	17038
1adrA	76	48.24	a.35.1.2	17042
1r69A	69	53.25	a.35.1.2	17028
2bzgA	232	53.41	c.66.1.36	129559
1vs0A	310	53.47		
1qnaA	200	55.80	d.129.1.1,d.129.1.1	41226,41227
1r69	69	55.98		
2z0xA	158	56.58		
1kqqA	139	58.21	a.4.3.1	72885
2r7dA	469	58.33		
2q73A	100	59.28		
2b5aA	77	61.21	a.35.1.3	127882
1t3qA	168	62.10	a.56.1.1,d.15.4.2	106367,106368
1cxcA	124	62.49	a.3.1.1	15890
1yn5A	103	63.25		
2oqcA	327	67.67		
1y7yA	74	67.87	a.35.1.3	122729
1vqoP	149	70.45	a.94.1.1	120377
1zwyA	185	72.99	c.51.4.3	125753
1zh8A	340	73.03	c.2.1.3,d.81.1.5	125077,125078
1gqpA	221	73.05	b.18.1.9	70372
1y8aA	332	73.17		
1j3wA	163	77.86	d.110.7.1	90833
2dvwB	83	78.47		
1mai	131	79.58		
2cx5A	158	81.85		
2b67A	204	83.92	d.90.1.1	127970
1dbxA	158	86.55	d.116.1.1	40928
1r71A	178	86.69	a.4.14.1	104823
1ywqA	200	87.52	d.90.1.1	124162