# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 4.84e-09 d.98.1.1 134541 1jtgB 165 5.44e-09 d.98.1.1 67267 2o8xA 70 4.603 2h27A 73 5.314 a.4.13.2 135993 1adrA 76 8.555 a.35.1.2 17042 2fbhA 146 10.18 a.4.5.28 133245 1z82A 335 10.50 1utxA 66 10.82 a.35.1.3 108034 2croA 71 11.29 a.35.1.2 17038 1r69 69 11.61 2ijcA 145 11.87 a.152.1.3 137465 1r69A 69 12.18 a.35.1.2 17028 2cro 71 12.83 2ef8A 84 13.54 1wdvA 152 13.78 d.116.1.1 114539 1y7yA 74 13.79 a.35.1.3 122729 1t95A 240 15.04 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2o4dA 165 15.08 a.152.1.3 138907 1sedA 117 17.35 a.219.1.1 105449 2b5aA 77 17.58 a.35.1.3 127882 1p9qC 256 19.66 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1vjfA 180 19.72 d.116.1.1 100809 2auwA 170 23.05 a.35.1.10,d.331.1.1 127339,127340 2guzA 71 23.51 2avtA 378 23.79 1zh8A 340 24.05 c.2.1.3,d.81.1.5 125077,125078 2cx5A 158 24.07 1b0nA 111 25.31 a.34.1.1,a.35.1.3 17001,17064 1yn5A 103 28.07 2ho3A 325 28.85 1r8eA 278 29.71 a.6.1.3,d.60.1.1 104843,104844 2h36X 112 29.88 1or7A 194 30.57 a.4.13.2,a.177.1.1 87332,87333 2qmcB 188 34.24 1r71A 178 36.39 a.4.14.1 104823 2z0xA 158 37.45 1vz0A 230 38.55 a.4.14.1,d.268.1.1 108929,108930 1ituA 369 39.01 c.1.9.7 71423 1luzA 88 40.33 b.40.4.5 74271 2q0oA 236 41.03 1yk3A 210 41.54 d.108.1.1 123493 2dxaA 166 41.56 2o35A 105 41.78 1l3lA 234 42.43 a.4.6.2,d.110.5.1 73541,73542 1wnaA 131 43.90 d.319.1.1 121091 1zud2 66 45.49 1lc0A 294 45.57 c.2.1.3,d.81.1.4 73823,73824 1lj9A 144 48.39 a.4.5.28 78035 1t3qA 168 48.93 a.56.1.1,d.15.4.2 106367,106368 1ok7A 366 50.58 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 2a6cA 83 52.77 a.35.1.13 126236 1vkiA 181 52.81 d.116.1.1 108664 2i5gA 325 53.07 1fseA 74 55.00 a.4.6.2 60000 2oqcA 327 55.68 1lnwA 147 58.82 a.4.5.28 78104 1oaoA 674 60.23 e.26.1.2 86744 2rb7A 364 60.91 1mai 131 61.22 2b67A 204 63.02 d.90.1.1 127970 2ppxA 99 63.17 3cjnA 162 63.71 1tu3F 79 63.78 h.1.27.2 112644 1ta8A 332 64.18 d.142.2.2 112375 1wrjA 156 64.79 2qwwA 154 65.29 2r7dA 469 66.21 2fm8A 135 67.17 d.198.1.1 133767 1dbxA 158 67.23 d.116.1.1 40928 2hj1A 97 67.97 1mtpA 323 68.24 e.1.1.1 85107 2pqvA 154 70.18 1y9qA 192 71.24 a.35.1.8,b.82.1.15 116592,116593 1u14A 172 71.76 c.51.4.3 107579 1je8A 82 74.30 a.4.6.2 77108 1yn3A 98 74.35 1gq6A 313 74.39 c.42.1.1 70341 1vj7A 393 75.75 a.211.1.1,d.218.1.8 100801,100802 2ebyA 113 76.37 3bddA 142 79.09 3broA 141 80.45 1k8kG 151 82.14 a.118.13.1 68313 1zljA 78 83.50 2ictA 94 83.75 1vd6A 224 83.99 c.1.18.3 119991 2r1fA 270 84.02 1vs0A 310 85.67 1mgtA 174 86.28 a.4.2.1,c.55.7.1 16078,33753 1k1vA 41 87.43 a.37.1.1 71999 3bj6A 152 87.92 2fozA 347 87.95 2b79A 144 88.19 1vhtA 218 89.72 c.37.1.1 100700