# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.24e-09	d.98.1.1	134541
1jtgB	165	1.71e-09	d.98.1.1	67267
2avtA	378	3.929		
1ok7A	366	6.598	d.131.1.1,d.131.1.1,d.131.1.1	103992,103993,103994
2o8xA	70	9.475		
2h27A	73	9.895	a.4.13.2	135993
1z82A	335	12.18		
1wnaA	131	16.19	d.319.1.1	121091
1tu3F	79	17.33	h.1.27.2	112644
1k8kG	151	18.11	a.118.13.1	68313
2ijcA	145	19.74	a.152.1.3	137465
2guzA	71	24.84		
1kqqA	139	28.09	a.4.3.1	72885
2o4dA	165	29.07	a.152.1.3	138907
2p1mA	163	30.02		
2fbhA	146	32.44	a.4.5.28	133245
1utxA	66	33.01	a.35.1.3	108034
1hkqA	132	34.15	a.4.5.10	83555
1gq6A	313	35.29	c.42.1.1	70341
2cro	71	37.11		
1r69	69	37.51		
1adrA	76	38.01	a.35.1.2	17042
2croA	71	38.32	a.35.1.2	17038
2q73A	100	38.65		
2grjA	192	38.71		
1r69A	69	40.38	a.35.1.2	17028
2r79A	283	41.07		
2ja9A	175	44.91		
2ci1A	275	45.04		
1vhtA	218	45.78	c.37.1.1	100700
2b5aA	77	51.50	a.35.1.3	127882
1yn4A	99	52.57		
2r7dA	469	57.68		
2qndA	144	59.39		
1ztuA	341	60.96		
1wdeA	294	62.94	c.90.1.1	114534
1y8aA	332	66.65		
1q8fA	313	68.10	c.70.1.1	96203
1or7A	194	68.59	a.4.13.2,a.177.1.1	87332,87333
1yn5A	103	68.79		
1tltA	319	69.03	c.2.1.3,d.81.1.5	107135,107136
1sedA	117	69.13	a.219.1.1	105449
1vjfA	180	70.14	d.116.1.1	100809
1b0nA	111	71.11	a.34.1.1,a.35.1.3	17001,17064
1y7yA	74	71.13	a.35.1.3	122729
1r71A	178	71.19	a.4.14.1	104823
2cmuA	342	72.07		
2ho3A	325	72.79		
1ngrA	85	72.95	a.77.1.2	18422
1hlvA	131	73.93	a.4.1.7,a.4.1.7	65854,65855
1yn3A	98	74.19		
1ituA	369	74.24	c.1.9.7	71423
1j3wA	163	76.59	d.110.7.1	90833
1ywqA	200	77.01	d.90.1.1	124162
2oieA	111	77.01	a.204.1.2	139092
2rffA	111	77.54		
1zh8A	340	78.22	c.2.1.3,d.81.1.5	125077,125078
1t3qA	168	78.57	a.56.1.1,d.15.4.2	106367,106368
1p9qC	256	79.11	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1t95A	240	79.51	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1nekD	115	80.17	f.21.2.2	80432
2dvwB	83	81.10		
2masA	314	85.33	c.70.1.1	34810
2fz0A	149	87.23		
1yoeA	322	88.35