# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	8.30e-10	d.98.1.1	134541
1jtgB	165	1.16e-09	d.98.1.1	67267
2avtA	378	4.186		
1ok7A	366	6.705	d.131.1.1,d.131.1.1,d.131.1.1	103992,103993,103994
1z82A	335	9.358		
2o8xA	70	12.43		
2h27A	73	13.17	a.4.13.2	135993
1wnaA	131	13.55	d.319.1.1	121091
1tu3F	79	15.03	h.1.27.2	112644
2ijcA	145	16.95	a.152.1.3	137465
1k8kG	151	17.06	a.118.13.1	68313
2o4dA	165	23.69	a.152.1.3	138907
1kqqA	139	28.19	a.4.3.1	72885
2p1mA	163	32.22		
2grjA	192	33.04		
2ci1A	275	34.00		
2fbhA	146	34.28	a.4.5.28	133245
2r79A	283	37.98		
2guzA	71	38.28		
1gq6A	313	40.76	c.42.1.1	70341
1hkqA	132	40.91	a.4.5.10	83555
1utxA	66	42.47	a.35.1.3	108034
2r7dA	469	42.81		
2cro	71	44.36		
1adrA	76	44.40	a.35.1.2	17042
2croA	71	45.59	a.35.1.2	17038
1r69	69	45.62		
2q73A	100	46.86		
1ztuA	341	47.86		
1r69A	69	48.65	a.35.1.2	17028
2fz0A	149	51.31		
2ja9A	175	52.02		
1vhtA	218	53.03	c.37.1.1	100700
1yn5A	103	53.41		
1yn4A	99	53.52		
1wdeA	294	53.80	c.90.1.1	114534
2qndA	144	55.31		
1vd6A	224	57.00	c.1.18.3	119991
1sedA	117	64.30	a.219.1.1	105449
2b5aA	77	65.83	a.35.1.3	127882
1yn3A	98	67.21		
1y7yA	74	68.70	a.35.1.3	122729
1q8fA	313	69.44	c.70.1.1	96203
1tltA	319	70.50	c.2.1.3,d.81.1.5	107135,107136
1vjfA	180	72.73	d.116.1.1	100809
2cmuA	342	73.35		
1t3qA	168	74.55	a.56.1.1,d.15.4.2	106367,106368
2oieA	111	75.75	a.204.1.2	139092
1f2tA	149	77.57	c.37.1.12	32373
1p9qC	256	78.64	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2dqaA	124	78.91		
1r71A	178	79.79	a.4.14.1	104823
1ituA	369	81.49	c.1.9.7	71423
1ngrA	85	81.70	a.77.1.2	18422
2rffA	111	82.90		
2ho3A	325	83.62		
1nekD	115	85.45	f.21.2.2	80432
1t95A	240	85.98	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1b0nA	111	86.76	a.34.1.1,a.35.1.3	17001,17064
1or7A	194	86.80	a.4.13.2,a.177.1.1	87332,87333
2pttB	112	87.31