# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 3.59e-12 d.98.1.1 134541 1jtgB 165 6.43e-12 d.98.1.1 67267 1z82A 335 2.115 1nbaA 264 3.394 c.33.1.3 31753 2dkhA 639 4.261 1vjfA 180 4.806 d.116.1.1 100809 1ztuA 341 4.891 2cmuA 342 7.086 1tltA 319 7.136 c.2.1.3,d.81.1.5 107135,107136 1h6vA 499 7.540 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1wdcC 156 8.933 a.39.1.5 17317 1ngrA 85 9.148 a.77.1.2 18422 1bu6O 501 10.47 c.55.1.4,c.55.1.4 33499,33500 2fp4B 395 11.03 c.23.4.1,d.142.1.4 133897,133898 1rydA 387 11.37 c.2.1.3,d.81.1.5 118801,118802 1w7jA 795 12.87 b.34.3.1,c.37.1.9 120688,120689 1p9qC 256 13.02 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2o8xA 70 13.74 1hkqA 132 13.75 a.4.5.10 83555 2gv5A 161 14.18 2gruA 368 14.76 2pi6A 361 17.00 2h27A 73 17.22 a.4.13.2 135993 2fbhA 146 17.42 a.4.5.28 133245 1wnaA 131 19.50 d.319.1.1 121091 1zh8A 340 19.52 c.2.1.3,d.81.1.5 125077,125078 1wdeA 294 21.08 c.90.1.1 114534 2p2sA 336 22.85 2oaaA 249 23.35 1k8kG 151 24.51 a.118.13.1 68313 2o5gA 148 27.63 1sedA 117 27.75 a.219.1.1 105449 2qwwA 154 28.40 2oqcA 327 29.60 2imhA 231 30.58 2oxgB 124 30.94 1vlbA 907 31.35 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 3bcwA 123 33.04 1tu3F 79 33.08 h.1.27.2 112644 2h1yA 321 35.14 1yn3A 98 35.35 1zbpA 273 35.81 e.61.1.1 124861 2obhA 143 35.94 2o4dA 165 36.73 a.152.1.3 138907 2guzA 71 37.29 1j1nA 492 38.96 c.94.1.1 83978 2chuA 296 39.40 c.92.2.4 130485 1gbgA 214 39.82 b.29.1.2 24171 1jr7A 311 40.29 b.82.2.3 63255 1vd6A 224 41.42 c.1.18.3 119991 1u5tA 233 44.24 a.4.5.54,a.4.5.54 107684,107685 1ve4A 206 44.67 c.94.1.1 120012 1vdhA 249 45.33 d.58.4.10 108523 1apyB 141 45.42 2bv6A 142 45.77 2v7kA 361 45.91 1o1zA 234 46.34 c.1.18.3 86555 1ojjA 402 46.50 b.29.1.10 93130 1j3wA 163 46.83 d.110.7.1 90833 2z0xA 158 48.14 1utxA 66 48.64 a.35.1.3 108034 2d4rA 147 49.22 d.129.3.6 131256 2r7dA 469 49.96 1lldA 319 50.58 c.2.1.5,d.162.1.1 30177,42144 1kqqA 139 51.21 a.4.3.1 72885 2ef5A 290 51.41 2reeA 224 51.95 1wdkC 390 53.16 c.95.1.1,c.95.1.1 109258,109259 2p8bA 369 53.49 1h2kA 349 55.14 b.82.2.6 76572 2qdfA 335 55.31 1of5B 184 55.79 d.17.4.2 86934 2ns9A 157 56.35 3boqA 160 58.35 2avtA 378 58.85 1sekA 378 59.07 e.1.1.1 42675 2cro 71 59.63 2fjuB 799 60.28 2goyA 275 61.01 2croA 71 62.01 a.35.1.2 17038 2grjA 192 62.14 1rw1A 114 62.39 c.47.1.12 111945 1vhtA 218 62.63 c.37.1.1 100700 1yoeA 322 62.88 2h36X 112 63.75 2i3oA 516 65.67 d.153.1.6 137027 1byi 224 66.15 1r69 69 66.21 2ghpA 292 66.52 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1r69A 69 66.90 a.35.1.2 17028 1ggzA 148 67.16 a.39.1.5 70176 1y7yA 74 69.68 a.35.1.3 122729 2pvuA 272 70.13 2fq6A 415 70.80 c.67.1.3 133939 1r71A 178 71.92 a.4.14.1 104823 2ad6A 571 73.11 b.70.1.1 126568 2pywA 420 73.58 1oaoA 674 74.89 e.26.1.2 86744 2rhsA 294 76.49 2b5aA 77 76.92 a.35.1.3 127882 2dqaA 124 78.80 2d42A 249 78.87 1aosA 464 79.96 a.127.1.1 19414 1foeA 377 81.82 a.87.1.1,b.55.1.1 18517,26969 2eiyA 308 81.89 2r01A 210 82.96 2cx5A 158 83.09 2v3zA 440 83.31 1mpyA 307 83.49 d.32.1.3,d.32.1.3 38508,38509 2rerA 173 84.69 1jiwI 106 86.11 b.61.2.1 63078 1y1xA 191 86.67 a.39.1.8 116374 1vprA 374 86.93 b.60.1.7 120066 1eg5A 384 87.28 c.67.1.3 34429 2q1sA 377 87.33 3cswA 285 87.48 2g7zA 282 88.02 2jhnA 295 88.28 2dzmA 100 89.92