# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	2.78e-10	d.98.1.1	67267
2g2uB	165	3.51e-10	d.98.1.1	134541
2avtA	378	4.168		
2o8xA	70	8.040		
2h27A	73	9.216	a.4.13.2	135993
1ok7A	366	9.489	d.131.1.1,d.131.1.1,d.131.1.1	103992,103993,103994
1wnaA	131	10.48	d.319.1.1	121091
2ijcA	145	14.43	a.152.1.3	137465
1k8kG	151	14.86	a.118.13.1	68313
1z82A	335	18.29		
2o4dA	165	19.38	a.152.1.3	138907
2guzA	71	20.46		
1tu3F	79	20.81	h.1.27.2	112644
1sedA	117	21.63	a.219.1.1	105449
2fbhA	146	25.31	a.4.5.28	133245
2grjA	192	27.96		
1utxA	66	29.02	a.35.1.3	108034
2ja9A	175	29.42		
2cro	71	31.82		
2croA	71	32.45	a.35.1.2	17038
1kqqA	139	35.12	a.4.3.1	72885
1r69	69	37.88		
1r69A	69	38.64	a.35.1.2	17028
2ho3A	325	39.13		
2r7dA	469	44.05		
1vhtA	218	44.46	c.37.1.1	100700
2b5aA	77	45.05	a.35.1.3	127882
1vjfA	180	45.20	d.116.1.1	100809
1gq6A	313	47.50	c.42.1.1	70341
1adrA	76	47.96	a.35.1.2	17042
2q73A	100	49.55		
2d4rA	147	49.60	d.129.3.6	131256
1y7yA	74	50.15	a.35.1.3	122729
2p1mA	163	50.43		
1ituA	369	50.48	c.1.9.7	71423
1oaoA	674	50.63	e.26.1.2	86744
1hkqA	132	50.77	a.4.5.10	83555
2i5gA	325	55.07		
1yn5A	103	56.07		
2rffA	111	56.55		
1tltA	319	57.00	c.2.1.3,d.81.1.5	107135,107136
1mai	131	59.13		
1or7A	194	68.14	a.4.13.2,a.177.1.1	87332,87333
2oieA	111	68.86	a.204.1.2	139092
1cxcA	124	68.89	a.3.1.1	15890
1y8aA	332	70.82		
2dvwB	83	71.19		
1rw1A	114	73.19	c.47.1.12	111945
1r71A	178	74.29	a.4.14.1	104823
1dmlB	36	75.17		
2fz0A	149	75.75		
1yn3A	98	76.75		
2ogiA	196	77.54		
2r79A	283	78.21		
2ef8A	84	78.49		
2masA	314	79.75	c.70.1.1	34810
1r8eA	278	85.04	a.6.1.3,d.60.1.1	104843,104844
1t3qA	168	85.22	a.56.1.1,d.15.4.2	106367,106368
1p9qC	256	86.01	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2gmyA	153	86.10	a.152.1.3	135398
1b0nA	111	88.91	a.34.1.1,a.35.1.3	17001,17064