# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	2.84e-11	d.98.1.1	67267
2g2uB	165	2.88e-11	d.98.1.1	134541
2avtA	378	6.275		
1wnaA	131	11.87	d.319.1.1	121091
2o8xA	70	12.24		
1k8kG	151	14.26	a.118.13.1	68313
2ijcA	145	14.45	a.152.1.3	137465
2h27A	73	15.69	a.4.13.2	135993
1tu3F	79	16.73	h.1.27.2	112644
2fbhA	146	19.39	a.4.5.28	133245
2o4dA	165	19.82	a.152.1.3	138907
1ok7A	366	20.56	d.131.1.1,d.131.1.1,d.131.1.1	103992,103993,103994
1gq6A	313	26.22	c.42.1.1	70341
2guzA	71	26.36		
1z82A	335	30.74		
2fz0A	149	31.86		
1hkqA	132	35.23	a.4.5.10	83555
2ci1A	275	35.87		
1yn5A	103	35.91		
1ztuA	341	37.70		
1cxcA	124	39.19	a.3.1.1	15890
1kqqA	139	39.67	a.4.3.1	72885
2p1mA	163	46.63		
2q73A	100	51.46		
2croA	71	51.90	a.35.1.2	17038
2rffA	111	53.87		
1utxA	66	54.80	a.35.1.3	108034
2cro	71	55.51		
1adrA	76	57.55	a.35.1.2	17042
1tltA	319	58.87	c.2.1.3,d.81.1.5	107135,107136
2oieA	111	58.87	a.204.1.2	139092
1vjfA	180	59.51	d.116.1.1	100809
1y8aA	332	60.45		
1r69A	69	62.66	a.35.1.2	17028
2gxgA	146	62.86		
1r69	69	64.95		
1f2tA	149	65.21	c.37.1.12	32373
2grjA	192	65.71		
2cmuA	342	66.89		
1sedA	117	69.10	a.219.1.1	105449
3bddA	142	69.43		
2ho3A	325	74.26		
1oaoA	674	74.32	e.26.1.2	86744
2czrA	226	74.43		
2r7dA	469	75.05		
1vj7A	393	76.96	a.211.1.1,d.218.1.8	100801,100802
1vd6A	224	77.32	c.1.18.3	119991
1vdhA	249	79.91	d.58.4.10	108523
1yn3A	98	79.98		
1t3qA	168	82.26	a.56.1.1,d.15.4.2	106367,106368
1khxA	227	82.66	b.26.1.1	68631
2dvwB	83	83.14		
1r8eA	278	89.00	a.6.1.3,d.60.1.1	104843,104844