# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	8.01e-10	d.98.1.1	67267
2g2uB	165	9.42e-10	d.98.1.1	134541
1wnaA	131	9.081	d.319.1.1	121091
2o8xA	70	9.606		
2h27A	73	11.52	a.4.13.2	135993
2ijcA	145	12.89	a.152.1.3	137465
1k8kG	151	15.80	a.118.13.1	68313
1ok7A	366	16.68	d.131.1.1,d.131.1.1,d.131.1.1	103992,103993,103994
2avtA	378	17.08		
2o4dA	165	19.52	a.152.1.3	138907
1yn5A	103	23.66		
2fbhA	146	24.83	a.4.5.28	133245
1z82A	335	25.65		
1tu3F	79	28.01	h.1.27.2	112644
2guzA	71	30.77		
1adrA	76	35.00	a.35.1.2	17042
2ci1A	275	35.64		
2grjA	192	36.36		
1utxA	66	37.08	a.35.1.3	108034
2croA	71	39.34	a.35.1.2	17038
2cro	71	42.48		
1kqqA	139	45.17	a.4.3.1	72885
1gq6A	313	47.44	c.42.1.1	70341
1yn4A	99	47.56		
2r7dA	469	49.31		
2h36X	112	50.20		
2rffA	111	51.31		
2p1mA	163	51.89		
1r69A	69	52.07	a.35.1.2	17028
1vjfA	180	53.84	d.116.1.1	100809
1yn3A	98	54.01		
1ztuA	341	55.67		
1r69	69	57.13		
1r8eA	278	57.27	a.6.1.3,d.60.1.1	104843,104844
2b5aA	77	61.76	a.35.1.3	127882
2dvwB	83	63.55		
1vd6A	224	66.40	c.1.18.3	119991
2ho3A	325	66.72		
2oieA	111	68.10	a.204.1.2	139092
1cxcA	124	68.57	a.3.1.1	15890
1y7yA	74	68.57	a.35.1.3	122729
2q73A	100	69.34		
1ituA	369	70.25	c.1.9.7	71423
2gu3A	136	74.22		
1or7A	194	75.63	a.4.13.2,a.177.1.1	87332,87333
1sedA	117	75.66	a.219.1.1	105449
1y8aA	332	77.49		
1t3qA	168	83.75	a.56.1.1,d.15.4.2	106367,106368
1vz0A	230	84.19	a.4.14.1,d.268.1.1	108929,108930
2gmyA	153	85.25	a.152.1.3	135398
1oaoA	674	86.89	e.26.1.2	86744
2gxgA	146	88.34