# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	2.87e-09	d.98.1.1	67267
2g2uB	165	3.11e-09	d.98.1.1	134541
2o8xA	70	10.79		
2h27A	73	12.28	a.4.13.2	135993
1yn3A	98	18.38		
1z82A	335	19.95		
2ijcA	145	21.63	a.152.1.3	137465
1hkqA	132	22.02	a.4.5.10	83555
1utxA	66	23.96	a.35.1.3	108034
1yn5A	103	24.79		
2guzA	71	26.41		
1tu3F	79	27.98	h.1.27.2	112644
1dgwY	93	28.08		
1yn4A	99	32.45		
2croA	71	33.75	a.35.1.2	17038
2cro	71	34.42		
2fbhA	146	36.29	a.4.5.28	133245
2o4dA	165	36.91	a.152.1.3	138907
1adrA	76	39.10	a.35.1.2	17042
1wnaA	131	41.60	d.319.1.1	121091
1r69A	69	42.55	a.35.1.2	17028
1r69	69	43.77		
2grjA	192	45.69		
1p9qC	256	46.50	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1yx0A	159	48.09	d.108.1.1	124168
2p1mA	163	49.59		
1k8kG	151	50.25	a.118.13.1	68313
2b5aA	77	52.54	a.35.1.3	127882
1ucrA	78	54.06	a.4.5.45	99188
1t95A	240	54.90	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1b0nA	111	56.34	a.34.1.1,a.35.1.3	17001,17064
2nyxA	168	57.65		
2gxgA	146	58.60		
3boqA	160	59.07		
3bddA	142	61.24		
1y7yA	74	62.27	a.35.1.3	122729
1or4A	178	62.35	a.1.1.2	93447
1cxcA	124	63.22	a.3.1.1	15890
1yseA	141	64.67	a.35.1.7	123970
1vdhA	249	66.05	d.58.4.10	108523
1e6wA	260	67.94	c.2.1.2	59326
1u16A	472	73.53	a.127.1.1	112952
1ovxA	67	75.33	g.39.1.11	93622
2fz0A	149	77.18		
1dmlB	36	80.11		
1l3lA	234	80.37	a.4.6.2,d.110.5.1	73541,73542
1qrvA	73	83.84	a.21.1.1	16425
2z0xA	158	88.54		
2ef8A	84	89.72