Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2g2uB	4.6538e-12	2g2uB/T0399-2g2uB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
1jtgB	5.0419e-12	1jtgB/T0399-1jtgB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
2h27A	1.6108e+01	2h27A/T0399-2h27A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.13.2
2o8xA	1.6738e+01	2o8xA/T0399-2o8xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h36X	2.0016e+01	2h36X/T0399-2h36X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gxgA	3.3620e+01	2gxgA/T0399-2gxgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vjfA	4.4611e+01	1vjfA/T0399-1vjfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.116.1.1
3bj6A	4.9721e+01	3bj6A/T0399-3bj6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r69A	5.0865e+01	1r69A/T0399-1r69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
2croA	5.1400e+01	2croA/T0399-2croA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
1y7yA	5.3472e+01	1y7yA/T0399-1y7yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.3
1utxA	5.3814e+01	1utxA/T0399-1utxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.3
3bjaA	5.5358e+01	3bjaA/T0399-3bjaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2b5aA	5.5799e+01	2b5aA/T0399-2b5aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.3
3ccgA	5.6412e+01	3ccgA/T0399-3ccgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oqbA	5.6459e+01	2oqbA/T0399-2oqbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2guzA	5.7086e+01	2guzA/T0399-2guzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wdvA	5.7683e+01	1wdvA/T0399-1wdvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.116.1.1
3boqA	5.7772e+01	3boqA/T0399-3boqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bddA	5.8706e+01	3bddA/T0399-3bddA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001