# List of top-scoring protein chains for T0399.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s0wC	165	5.74e-07	d.98.1.1	98311
1xxmC	165	6.79e-07		
2g2uB	165	8.66e-07	d.98.1.1	134541
2pxgA	118	0.2783		
1h6vA	499	19.59	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1mqbA	333	29.51	d.144.1.7	91392
2qo9A	373	30.69		
2qodA	373	30.72		
2qofA	373	30.85		
2qocA	344	30.87		
2qolA	373	31.02		
2qoiA	373	31.03		
2qooA	373	31.10		
2qokA	373	32.49		
2j3nA	519	32.91		
2r2pA	295	33.26		
2cfyA	521	34.11		
2qonA	373	35.69		
2qo7A	373	36.79		
2qobA	344	37.00		
1jofA	365	39.15	b.69.10.1	71775
1zkqA	517	41.21		
1gq6A	313	44.82	c.42.1.1	70341
2reiA	318	54.24		
1j7jA	178	58.22	c.61.1.1	84131
1ucrA	78	61.52	a.4.5.45	99188
1b72B	87	66.99	a.4.1.1	16001
1a0pA	290	75.77	a.60.9.1,d.163.1.1	18105,42165
2coiA	386	83.28		
1pufB	73	86.82	a.4.1.1	95132