# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	7.16e-13	d.98.1.1	67267
2g2uB	165	7.98e-13	d.98.1.1	134541
2h27A	73	8.582	a.4.13.2	135993
2o8xA	70	9.197		
1vjfA	180	16.42	d.116.1.1	100809
2guzA	71	16.98		
2q88A	257	21.53		
2croA	71	21.69	a.35.1.2	17038
3ccgA	190	21.74		
2zceA	291	21.85		
1o17A	345	23.44	a.46.2.1,c.27.1.1	80765,80766
1r69A	69	23.60	a.35.1.2	17028
2gxgA	146	24.13		
1y7yA	74	25.03	a.35.1.3	122729
1utxA	66	25.97	a.35.1.3	108034
1j3wA	163	27.91	d.110.7.1	90833
1wdvA	152	28.19	d.116.1.1	114539
2p2sA	336	29.20		
1vkiA	181	29.48	d.116.1.1	108664
2b5aA	77	29.98	a.35.1.3	127882
1xipA	388	30.55	b.69.14.1	115360
2bjfA	329	31.31		
1adrA	76	31.79	a.35.1.2	17042
2cro	71	32.29		
1b0nA	111	33.51	a.34.1.1,a.35.1.3	17001,17064
1gq6A	313	36.15	c.42.1.1	70341
1u14A	172	36.84	c.51.4.3	107579
2a0mA	316	37.03	c.42.1.1	125960
2pvaA	345	38.31	d.153.1.3	41850
3bjaA	139	39.34		
3bj6A	152	40.00		
3bddA	142	40.11		
1vd6A	224	41.71	c.1.18.3	119991
2p1mA	163	42.08		
2h36X	112	42.88		
1ituA	369	43.89	c.1.9.7	71423
1or7A	194	45.12	a.4.13.2,a.177.1.1	87332,87333
3boqA	160	46.11		
2fbhA	146	46.20	a.4.5.28	133245
2agmA	167	46.56		
2rdpA	150	47.42		
1y3tA	337	47.84	b.82.1.5	122600
2ef8A	84	58.12		
2r9zA	463	62.93		
2dvwB	83	64.80		
2grjA	192	65.04		
2iskA	230	65.47		
3grsA	478	68.14	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
1ewqA	765	68.43	a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1	19069,32383,33740,39743
1sedA	117	70.86	a.219.1.1	105449
2astA	159	72.68		
2z0xA	158	73.32		
1r71A	178	74.60	a.4.14.1	104823
1r69	69	83.16		
2cx5A	158	83.27		
1zud2	66	85.22		
1j1jA	240	86.58	a.118.16.1	90762