# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	8.62e-13	d.98.1.1	134541
1jtgB	165	8.67e-13	d.98.1.1	67267
2pvaA	345	10.57	d.153.1.3	41850
3ccgA	190	14.41		
2h36X	112	15.23		
2bjfA	329	17.42		
2h27A	73	18.70	a.4.13.2	135993
1vjfA	180	18.72	d.116.1.1	100809
2gxgA	146	20.35		
1xipA	388	20.47	b.69.14.1	115360
2o8xA	70	21.14		
2p2sA	336	22.89		
2q88A	257	32.41		
2zceA	291	33.14		
1o17A	345	33.48	a.46.2.1,c.27.1.1	80765,80766
2iccA	119	35.82		
2nnnA	140	37.39		
3bddA	142	39.38		
3bj6A	152	43.01		
2a0mA	316	43.74	c.42.1.1	125960
3bjaA	139	44.78		
1gq6A	313	44.80	c.42.1.1	70341
1vd6A	224	45.56	c.1.18.3	119991
3boqA	160	47.89		
1wdvA	152	48.02	d.116.1.1	114539
2guzA	71	48.76		
1vkiA	181	49.10	d.116.1.1	108664
1y3tA	337	50.36	b.82.1.5	122600
2grjA	192	52.23		
1p3dA	475	55.62	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1y7yA	74	57.06	a.35.1.3	122729
1r69A	69	57.98	a.35.1.2	17028
1hkqA	132	58.49	a.4.5.10	83555
1j3wA	163	59.29	d.110.7.1	90833
1utxA	66	59.60	a.35.1.3	108034
2fbhA	146	60.44	a.4.5.28	133245
1wnaA	131	61.78	d.319.1.1	121091
2astA	159	62.22		
1j7lA	264	62.63	d.144.1.6	62697
1ituA	369	63.72	c.1.9.7	71423
2rdpA	150	64.11		
2croA	71	64.13	a.35.1.2	17038
1zh8A	340	66.12	c.2.1.3,d.81.1.5	125077,125078
2d4rA	147	66.89	d.129.3.6	131256
1jj2Q	154	67.20	d.55.1.1	63102
2p1mA	163	70.04		
2b5aA	77	72.23	a.35.1.3	127882
1b0nA	111	75.88	a.34.1.1,a.35.1.3	17001,17064
1sedA	117	80.55	a.219.1.1	105449
1yn5A	103	87.05		
1ppjD	241	87.25	a.3.1.3,f.23.11.1	104258,104259
1adrA	76	87.45	a.35.1.2	17042
1m07A	111	88.47	d.5.1.1	78328