# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 6.66e-13 d.98.1.1 134541 1jtgB 165 8.14e-13 d.98.1.1 67267 2h27A 73 3.699 a.4.13.2 135993 2o8xA 70 4.450 1y7yA 74 5.446 a.35.1.3 122729 1utxA 66 5.645 a.35.1.3 108034 1u14A 172 5.826 c.51.4.3 107579 1wdvA 152 6.113 d.116.1.1 114539 1r69A 69 6.463 a.35.1.2 17028 1lvaA 258 6.721 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2b5aA 77 6.948 a.35.1.3 127882 1adrA 76 8.015 a.35.1.2 17042 2croA 71 8.552 a.35.1.2 17038 3cjnA 162 8.609 2ef8A 84 8.935 3ccgA 190 9.080 3bj6A 152 9.366 2cro 71 11.15 2fbhA 146 12.21 a.4.5.28 133245 1b0nA 111 12.97 a.34.1.1,a.35.1.3 17001,17064 2gxgA 146 13.18 1zud2 66 14.74 1vjfA 180 14.75 d.116.1.1 100809 2q88A 257 15.17 1t95A 240 15.52 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2cx5A 158 19.48 1jj2Q 154 19.58 d.55.1.1 63102 2o35A 105 20.88 1r69 69 21.29 3broA 141 21.74 2bbrA 195 21.92 1lnwA 147 22.06 a.4.5.28 78104 1p9qC 256 22.12 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2rdpA 150 22.23 2guzA 71 23.33 2bjfA 329 24.42 1lj9A 144 24.83 a.4.5.28 78035 2astA 159 25.39 1sedA 117 25.52 a.219.1.1 105449 1mtpA 323 26.34 e.1.1.1 85107 2zceA 291 27.56 2h36X 112 27.95 3bddA 142 28.76 2fa5A 162 29.16 1or7A 194 29.22 a.4.13.2,a.177.1.1 87332,87333 2p2sA 336 30.53 1yk3A 210 31.78 d.108.1.1 123493 2qwwA 154 33.19 2nnnA 140 34.58 1mtyD 512 34.97 a.25.1.2 16742 1vkiA 181 35.34 d.116.1.1 108664 2pvaA 345 35.93 d.153.1.3 41850 1zh8A 340 36.21 c.2.1.3,d.81.1.5 125077,125078 1vd6A 224 36.32 c.1.18.3 119991 1lmb3 92 36.42 2ethA 154 38.58 a.4.5.28 132358 1o17A 345 38.78 a.46.2.1,c.27.1.1 80765,80766 1tr8A 102 40.49 2z0xA 158 41.09 1bouA 139 44.18 a.88.1.1 18521 1gq6A 313 45.81 c.42.1.1 70341 3boqA 160 46.15 2a0mA 316 46.51 c.42.1.1 125960 1r71A 178 47.49 a.4.14.1 104823 1ktbA 405 48.25 b.71.1.1,c.1.8.1 72960,72961 1j1jA 240 48.56 a.118.16.1 90762 2pexA 153 48.66 1vz0A 230 51.04 a.4.14.1,d.268.1.1 108929,108930 2fm8A 135 54.46 d.198.1.1 133767 2bnmA 198 54.49 a.35.1.3,b.82.1.10 128835,128836 2a6cA 83 56.33 a.35.1.13 126236 2reiA 318 58.76 2b67A 204 58.85 d.90.1.1 127970 1lbaA 146 58.92 d.118.1.1 41062 2r9zA 463 58.98 1npeA 267 59.11 b.68.5.1 92032 2bwvA 440 60.30 c.55.2.1,d.127.1.1 129387,129388 1ku3A 73 60.45 a.4.13.2 73000 1lv7A 257 60.50 c.37.1.20 78232 1g6aA 271 61.48 e.3.1.1 42704 2nncA 124 62.58 1mgtA 174 62.99 a.4.2.1,c.55.7.1 16078,33753 1ituA 369 64.88 c.1.9.7 71423 3bemA 218 66.08 1y9qA 192 66.50 a.35.1.8,b.82.1.15 116592,116593 2fp8A 322 66.72 1j3wA 163 67.62 d.110.7.1 90833 1y3tA 337 68.40 b.82.1.5 122600 2ijcA 145 71.91 a.152.1.3 137465 1qy5A 269 71.98 d.122.1.1 96573 1dlwA 116 72.01 a.1.1.1 14982 1xipA 388 73.52 b.69.14.1 115360 2ofyA 86 74.04 3bjaA 139 75.47 2nyxA 168 75.80 1su8A 636 76.51 e.26.1.2 98999 2agmA 167 77.81 1rqlA 267 79.21 c.108.1.3 97750 1zwyA 185 79.50 c.51.4.3 125753 2iskA 230 80.33 1s3jA 155 81.26 a.4.5.28 98437 1dosA 358 82.98 c.1.10.2 29175 2dvwB 83 83.70 3bu3A 306 83.70 1ta8A 332 83.75 d.142.2.2 112375 2r01A 210 84.96 1vp6A 138 86.25 b.82.3.2 113939 1l3lA 234 86.39 a.4.6.2,d.110.5.1 73541,73542