# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.22e-12	d.98.1.1	134541
1jtgB	165	2.51e-12	d.98.1.1	67267
2h27A	73	11.09	a.4.13.2	135993
2iccA	119	13.13		
2o8xA	70	13.99		
1vjfA	180	15.99	d.116.1.1	100809
2agmA	167	18.31		
2a0mA	316	19.72	c.42.1.1	125960
1o17A	345	24.58	a.46.2.1,c.27.1.1	80765,80766
2guzA	71	27.94		
2q88A	257	28.11		
1j3wA	163	32.49	d.110.7.1	90833
1gq6A	313	32.58	c.42.1.1	70341
1mtpA	323	33.36	e.1.1.1	85107
2zceA	291	33.37		
1zud2	66	33.47		
1y7yA	74	33.65	a.35.1.3	122729
1r69A	69	37.21	a.35.1.2	17028
1xipA	388	37.73	b.69.14.1	115360
1lvaA	258	37.98	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
1utxA	66	38.11	a.35.1.3	108034
2pvaA	345	41.62	d.153.1.3	41850
2croA	71	43.56	a.35.1.2	17038
1vkiA	181	43.63	d.116.1.1	108664
1g6aA	271	43.68	e.3.1.1	42704
2b5aA	77	43.76	a.35.1.3	127882
3ccgA	190	43.88		
2bjfA	329	44.02		
2p2sA	336	44.70		
1vd6A	224	45.29	c.1.18.3	119991
1tr8A	102	45.36		
2gxgA	146	46.00		
1wdvA	152	46.86	d.116.1.1	114539
1b0nA	111	50.00	a.34.1.1,a.35.1.3	17001,17064
1y3tA	337	50.77	b.82.1.5	122600
1jj2Q	154	50.80	d.55.1.1	63102
2vhxA	377	52.11		
1npeA	267	52.73	b.68.5.1	92032
1cx4A	305	53.53	b.82.3.2,b.82.3.2	59099,59100
2h36X	112	54.18		
2grjA	192	57.70		
2p1mA	163	57.86		
1kqqA	139	59.97	a.4.3.1	72885
3boqA	160	61.08		
1zh8A	340	63.07	c.2.1.3,d.81.1.5	125077,125078
3bjaA	139	63.70		
2ef8A	84	64.01		
2d4rA	147	64.11	d.129.3.6	131256
1m93B	245	64.62		
1adrA	76	65.56	a.35.1.2	17042
2pttB	112	69.31		
2cro	71	69.61		
1u14A	172	73.79	c.51.4.3	107579
3bddA	142	75.13		
2z0xA	158	76.01		
1m07A	111	78.28	d.5.1.1	78328
1m6yA	301	82.22	a.60.13.1,c.66.1.23	78716,78717
2fbhA	146	82.90	a.4.5.28	133245
2a2kA	175	83.59		
2pbyA	308	85.76		
2r9zA	463	86.59		
3bj6A	152	89.54