# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	9.21e-13	d.98.1.1	134541
1jtgB	165	1.28e-12	d.98.1.1	67267
2h27A	73	9.318	a.4.13.2	135993
2o8xA	70	10.87		
2q88A	257	18.01		
2a0mA	316	19.19	c.42.1.1	125960
2gxgA	146	20.50		
1vjfA	180	20.67	d.116.1.1	100809
1gq6A	313	20.67	c.42.1.1	70341
1jj2Q	154	21.17	d.55.1.1	63102
3boqA	160	26.70		
1j3wA	163	27.61	d.110.7.1	90833
2zceA	291	27.73		
3bjaA	139	28.39		
1utxA	66	28.79	a.35.1.3	108034
2guzA	71	29.21		
1r69A	69	29.35	a.35.1.2	17028
1zud2	66	32.75		
1y7yA	74	33.37	a.35.1.3	122729
2croA	71	33.62	a.35.1.2	17038
2b5aA	77	33.72	a.35.1.3	127882
2iccA	119	33.73		
1b0nA	111	35.15	a.34.1.1,a.35.1.3	17001,17064
3bddA	142	35.15		
1o17A	345	36.85	a.46.2.1,c.27.1.1	80765,80766
2agmA	167	37.77		
1wdvA	152	38.50	d.116.1.1	114539
2p1mA	163	39.73		
2grjA	192	39.84		
1xipA	388	41.28	b.69.14.1	115360
3bj6A	152	41.67		
2fbhA	146	42.09	a.4.5.28	133245
2p2sA	336	42.41		
3ccgA	190	46.96		
1adrA	76	47.18	a.35.1.2	17042
2qwwA	154	47.62		
1hkqA	132	51.15	a.4.5.10	83555
2h36X	112	51.19		
2cro	71	51.84		
1kqqA	139	52.74	a.4.3.1	72885
1or7A	194	57.30	a.4.13.2,a.177.1.1	87332,87333
1mtpA	323	57.68	e.1.1.1	85107
2ef8A	84	59.03		
2rdpA	150	63.38		
2vhxA	377	67.51		
1r71A	178	67.61	a.4.14.1	104823
1sedA	117	70.12	a.219.1.1	105449
1wnaA	131	70.88	d.319.1.1	121091
2bv6A	142	71.18		
2nnnA	140	73.04		
2ijcA	145	74.28	a.152.1.3	137465
2z1mA	345	74.52		
1vd6A	224	75.44	c.1.18.3	119991
1ituA	369	75.67	c.1.9.7	71423
1vkiA	181	77.37	d.116.1.1	108664
2ef5A	290	78.00		
1lvaA	258	78.13	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2nyxA	168	79.13		
1g6aA	271	79.93	e.3.1.1	42704
1k8kG	151	80.52	a.118.13.1	68313
2a2kA	175	81.38		
2z0xA	158	83.61		
1ovaA	386	86.69	e.1.1.1	42619
2pvaA	345	88.05	d.153.1.3	41850