# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	8.70e-13	d.98.1.1	134541
1jtgB	165	1.18e-12	d.98.1.1	67267
2h27A	73	12.12	a.4.13.2	135993
2o8xA	70	14.16		
2a0mA	316	14.33	c.42.1.1	125960
2agmA	167	15.55		
1vjfA	180	21.67	d.116.1.1	100809
1gq6A	313	23.11	c.42.1.1	70341
2q88A	257	24.04		
2iccA	119	24.61		
2zceA	291	26.06		
2gxgA	146	27.50		
1j3wA	163	31.26	d.110.7.1	90833
2guzA	71	32.91		
2p1mA	163	34.98		
1y7yA	74	36.65	a.35.1.3	122729
1o17A	345	37.33	a.46.2.1,c.27.1.1	80765,80766
3bjaA	139	37.96		
1r69A	69	38.08	a.35.1.2	17028
1jj2Q	154	38.79	d.55.1.1	63102
1zud2	66	40.46		
3ccgA	190	40.87		
1utxA	66	41.67	a.35.1.3	108034
3boqA	160	41.87		
2grjA	192	42.03		
1b0nA	111	43.73	a.34.1.1,a.35.1.3	17001,17064
2croA	71	43.84	a.35.1.2	17038
1mtpA	323	46.44	e.1.1.1	85107
2b5aA	77	49.48	a.35.1.3	127882
1xipA	388	49.77	b.69.14.1	115360
3bddA	142	51.47		
2vhxA	377	53.17		
3bj6A	152	55.80		
1wdvA	152	58.76	d.116.1.1	114539
1adrA	76	59.68	a.35.1.2	17042
2pttB	112	60.50		
1lvaA	258	62.14	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2fbhA	146	63.35	a.4.5.28	133245
2ef8A	84	63.80		
2pvaA	345	65.37	d.153.1.3	41850
1y3tA	337	65.82	b.82.1.5	122600
2nnnA	140	67.49		
2r9zA	463	67.62		
1g6aA	271	67.72	e.3.1.1	42704
2cro	71	68.84		
1vkiA	181	70.46	d.116.1.1	108664
1tr8A	102	71.69		
2p2sA	336	72.85		
1vd6A	224	72.90	c.1.18.3	119991
1m6yA	301	74.63	a.60.13.1,c.66.1.23	78716,78717
2h36X	112	75.40		
1kqqA	139	76.26	a.4.3.1	72885
2bv6A	142	77.16		
1m07A	111	77.24	d.5.1.1	78328
2pbyA	308	79.74		
2rdpA	150	80.00		
1hkqA	132	80.63	a.4.5.10	83555
1su8A	636	80.93	e.26.1.2	98999
2z1mA	345	81.54		
1cx4A	305	85.46	b.82.3.2,b.82.3.2	59099,59100
1xkpA	246	86.56	a.243.1.3	122086
2pqqA	149	88.90		
1omoA	322	89.96	c.2.1.13	104017