# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	9.01e-11	d.98.1.1	134541
1jtgB	165	1.12e-10	d.98.1.1	67267
2gxgA	146	12.48		
2o8xA	70	12.68		
3bddA	142	13.18		
2h27A	73	14.00	a.4.13.2	135993
3broA	141	17.71		
3bjaA	139	21.91		
2croA	71	22.21	a.35.1.2	17038
2b5aA	77	22.38	a.35.1.3	127882
3bj6A	152	24.07		
2cro	71	25.18		
2fbhA	146	26.44	a.4.5.28	133245
2grjA	192	27.19		
1utxA	66	29.00	a.35.1.3	108034
2rdpA	150	30.45		
1m07A	111	31.26	d.5.1.1	78328
1r69A	69	31.66	a.35.1.2	17028
1y7yA	74	32.28	a.35.1.3	122729
2h36X	112	32.50		
1b0nA	111	32.67	a.34.1.1,a.35.1.3	17001,17064
2bjfA	329	34.88		
3boqA	160	37.41		
1xipA	388	38.27	b.69.14.1	115360
2astA	159	42.53		
1lj9A	144	44.68	a.4.5.28	78035
1mv8A	436	44.94	a.100.1.4,c.2.1.6,c.26.3.1	85128,85129,85130
1wdvA	152	50.03	d.116.1.1	114539
2bv6A	142	50.26		
1adrA	76	52.60	a.35.1.2	17042
2bnmA	198	52.66	a.35.1.3,b.82.1.10	128835,128836
2guzA	71	55.15		
1t95A	240	57.73	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2pbyA	308	58.66		
1mai	131	63.72		
2bbrA	195	64.84		
2fbkA	181	67.06	a.4.5.28	133247
2ef8A	84	68.33		
2qwwA	154	70.76		
2ethA	154	72.70	a.4.5.28	132358
1repC	251	72.74	a.4.5.10,a.4.5.10	16125,16126
2fa5A	162	73.70		
2a61A	145	73.92	a.4.5.28	126187
2hzcA	87	79.02		
3cjnA	162	79.65		
1hkqA	132	80.73	a.4.5.10	83555
1vz0A	230	81.29	a.4.14.1,d.268.1.1	108929,108930
1u2fA	90	83.78	d.58.7.1	39168
1lssA	140	86.05	c.2.1.9	74246
1lnwA	147	86.67	a.4.5.28	78104
1r69	69	86.93		
1s3jA	155	87.35	a.4.5.28	98437
2fbiA	142	88.96	a.4.5.28	133246
2nyxA	168	89.82