# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	7.05e-13	d.98.1.1	67267
2g2uB	165	9.74e-13	d.98.1.1	134541
1o17A	345	7.559	a.46.2.1,c.27.1.1	80765,80766
2h27A	73	7.720	a.4.13.2	135993
2gxgA	146	8.089		
2o8xA	70	9.173		
3bj6A	152	13.04		
2pvaA	345	13.44	d.153.1.3	41850
2fbhA	146	15.97	a.4.5.28	133245
1vjfA	180	18.54	d.116.1.1	100809
2guzA	71	19.24		
2a0mA	316	20.11	c.42.1.1	125960
3bjaA	139	20.55		
3bddA	142	22.26		
3ccgA	190	22.47		
2p2sA	336	23.65		
1utxA	66	24.30	a.35.1.3	108034
1r69A	69	26.58	a.35.1.2	17028
2bjfA	329	27.32		
2agmA	167	27.53		
1y7yA	74	27.92	a.35.1.3	122729
1u14A	172	28.35	c.51.4.3	107579
2q88A	257	29.96		
1sedA	117	30.07	a.219.1.1	105449
1lvaA	258	31.43	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2b5aA	77	32.37	a.35.1.3	127882
2rdpA	150	32.57		
2iccA	119	32.73		
2croA	71	33.34	a.35.1.2	17038
1m6yA	301	34.52	a.60.13.1,c.66.1.23	78716,78717
1j3wA	163	36.61	d.110.7.1	90833
3boqA	160	36.78		
1hkqA	132	38.10	a.4.5.10	83555
2gu3A	136	39.47		
1ituA	369	39.59	c.1.9.7	71423
1gq6A	313	40.15	c.42.1.1	70341
1jj2Q	154	44.57	d.55.1.1	63102
2nnnA	140	45.60		
1y3tA	337	46.04	b.82.1.5	122600
2cro	71	46.56		
3broA	141	48.36		
1t95A	240	48.63	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1g6aA	271	49.07	e.3.1.1	42704
2r9zA	463	50.52		
2ef8A	84	50.99		
1wdvA	152	51.45	d.116.1.1	114539
1npeA	267	51.58	b.68.5.1	92032
1m07A	111	51.88	d.5.1.1	78328
2pliA	91	52.49		
1ppjD	241	52.74	a.3.1.3,f.23.11.1	104258,104259
1b0nA	111	52.89	a.34.1.1,a.35.1.3	17001,17064
1zud2	66	54.70		
1xipA	388	54.99	b.69.14.1	115360
1vkiA	181	56.78	d.116.1.1	108664
1mtpA	323	56.78	e.1.1.1	85107
2fa5A	162	61.33		
2reiA	318	61.45		
2h36X	112	62.21		
1lnwA	147	65.08	a.4.5.28	78104
1su8A	636	65.80	e.26.1.2	98999
2zceA	291	66.79		
1p9qC	256	71.17	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2dvwB	83	72.91		
1adrA	76	73.38	a.35.1.2	17042
1zwyA	185	75.53	c.51.4.3	125753
2d4rA	147	75.95	d.129.3.6	131256
2oqcA	327	77.38		
2qolA	376	79.07		
2cx5A	158	81.02		
2h0vA	338	82.60		
2nyxA	168	84.17		
1r69	69	86.38