# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 1.53e-12 d.98.1.1 134541 1jtgB 165 1.93e-12 d.98.1.1 67267 1cnvA 299 1.070 c.1.8.5 28989 2p2sA 336 1.781 2agmA 167 1.949 1vjfA 180 2.551 d.116.1.1 100809 2bv6A 142 2.748 9gafA 295 5.682 d.153.1.5 42008 1tltA 319 7.134 c.2.1.3,d.81.1.5 107135,107136 2cvzA 289 7.929 a.100.1.1,c.2.1.6 130890,130891 1nj4A 363 10.08 b.105.1.1,e.3.1.1 80545,80546 2z0xA 158 10.84 1sfsA 240 12.05 c.1.8.8 98846 1ppjD 241 12.39 a.3.1.3,f.23.11.1 104258,104259 1hkqA 132 13.86 a.4.5.10 83555 1ezvD 245 16.52 a.3.1.3,f.23.11.1 59546,59547 2pvaA 345 18.18 d.153.1.3 41850 3boqA 160 18.24 1g6aA 271 18.93 e.3.1.1 42704 2rerA 173 19.23 2iccA 119 20.74 2o8xA 70 21.38 2qwwA 154 21.39 2h27A 73 21.96 a.4.13.2 135993 1lv7A 257 22.18 c.37.1.20 78232 1h6vA 499 23.48 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2aaoA 166 23.65 2oqcA 327 23.80 2r9zA 463 24.01 2gxgA 146 24.28 2o8bB 1022 25.46 2z06A 252 25.49 2qdfA 335 25.51 2ghsA 326 26.49 b.68.6.1 135209 2fbhA 146 27.65 a.4.5.28 133245 1o6gA 710 28.44 b.69.7.1,c.69.1.4 81087,81088 1bifA 469 29.22 c.37.1.7,c.60.1.4 31961,34003 2qolA 376 29.56 1k8wA 327 29.77 b.122.1.1,d.265.1.2 83094,90388 2dkhA 639 31.01 1zh8A 340 31.43 c.2.1.3,d.81.1.5 125077,125078 1wdcC 156 31.59 a.39.1.5 17317 1lvaA 258 31.96 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2ef5A 290 32.82 1u14A 172 34.51 c.51.4.3 107579 2ns9A 157 34.94 1vd6A 224 35.23 c.1.18.3 119991 2d4rA 147 35.39 d.129.3.6 131256 1su8A 636 35.53 e.26.1.2 98999 3bj6A 152 35.64 2q88A 257 35.75 1cx4A 305 35.83 b.82.3.2,b.82.3.2 59099,59100 2bjfA 329 36.79 4cpvA 108 39.23 a.39.1.4 17198 2g7zA 282 40.75 1o1zA 234 41.04 c.1.18.3 86555 1p4kA 295 42.73 d.153.1.5 87772 2gruA 368 42.80 2h36X 112 42.94 1sotA 320 43.01 b.36.1.4,b.47.1.1 105852,105853 2ehzA 302 43.48 2h5cA 198 43.82 b.47.1.1 136145 1qy5A 269 47.71 d.122.1.1 96573 2gu3A 136 48.09 2pfxA 191 51.35 2oaaA 249 51.67 1kypA 237 51.81 d.22.1.1 73280 1ivnA 190 53.46 c.23.10.5 83719 1p1xA 260 53.50 c.1.10.1 104060 1tr8A 102 53.90 1wdvA 152 54.29 d.116.1.1 114539 1jiwI 106 55.70 b.61.2.1 63078 1ed8A 449 56.09 c.76.1.1 34988 1m6yA 301 56.49 a.60.13.1,c.66.1.23 78716,78717 1sedA 117 57.73 a.219.1.1 105449 2guzA 71 58.58 3ccgA 190 60.19 1kb9D 246 62.10 a.3.1.3,f.23.11.1 77317,77318 1e54A 332 62.93 f.4.3.1 59258 1oy3D 282 63.08 d.211.1.1 87554 1utxA 66 63.16 a.35.1.3 108034 1wdcB 156 63.79 a.39.1.5 17302 1jj2Q 154 65.25 d.55.1.1 63102 2bf6A 449 67.34 3bjaA 139 67.39 1yn3A 98 68.99 1vkiA 181 69.80 d.116.1.1 108664 2h0uA 217 70.20 1ms9A 648 70.56 b.29.1.15,b.68.1.1 85088,85089 1g9mG 321 70.61 d.172.1.1 42492 1te0A 318 70.73 b.36.1.4,b.47.1.1 112400,112401 3bu3A 306 71.67 1ewqA 765 72.61 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1h6dA 433 72.64 c.2.1.3,d.81.1.5 65656,65657 1vdhA 249 73.32 d.58.4.10 108523 1y7yA 74 73.41 a.35.1.3 122729 3cihA 739 73.43 2chuA 296 74.17 c.92.2.4 130485 2f3yA 148 75.54 1j3wA 163 75.67 d.110.7.1 90833 1m07A 111 75.78 d.5.1.1 78328 1r69A 69 76.97 a.35.1.2 17028 1p9qC 256 77.42 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2croA 71 77.55 a.35.1.2 17038 1o17A 345 79.88 a.46.2.1,c.27.1.1 80765,80766 2cx5A 158 80.41 1zud2 66 82.27 2pndA 119 82.91 2b5aA 77 85.09 a.35.1.3 127882 1x7oA 287 85.51 1kqqA 139 87.93 a.4.3.1 72885 2bfwA 200 88.75 c.87.1.8 128456 1j1nA 492 89.27 c.94.1.1 83978 1fc6A 388 89.47 b.36.1.3,c.14.1.2 64738,64739