# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.84e-12	d.98.1.1	67267
2g2uB	165	1.86e-12	d.98.1.1	134541
2gxgA	146	7.774		
3bjaA	139	12.54		
2agmA	167	13.37		
3bj6A	152	14.18		
1jj2Q	154	18.85	d.55.1.1	63102
3bddA	142	20.10		
3boqA	160	20.91		
2h27A	73	21.25	a.4.13.2	135993
2o8xA	70	22.19		
2nnnA	140	23.54		
2a0mA	316	23.61	c.42.1.1	125960
2fbhA	146	24.08	a.4.5.28	133245
1vjfA	180	24.41	d.116.1.1	100809
2rdpA	150	26.22		
3broA	141	29.30		
1gq6A	313	30.06	c.42.1.1	70341
2pvaA	345	32.56	d.153.1.3	41850
3ccgA	190	36.61		
1o17A	345	37.82	a.46.2.1,c.27.1.1	80765,80766
1y3tA	337	39.43	b.82.1.5	122600
3cjnA	162	41.47		
1lvaA	258	41.48	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2guzA	71	43.82		
2qwwA	154	45.25		
1xipA	388	46.20	b.69.14.1	115360
2p2sA	336	46.77		
2fa5A	162	47.55		
2bv6A	142	51.34		
2pttB	112	53.61		
1y7yA	74	53.74	a.35.1.3	122729
1r69A	69	54.47	a.35.1.2	17028
2fbkA	181	56.72	a.4.5.28	133247
1utxA	66	58.36	a.35.1.3	108034
2croA	71	58.90	a.35.1.2	17038
2nyxA	168	59.86		
2ethA	154	61.50	a.4.5.28	132358
2iccA	119	64.47		
1lnwA	147	64.72	a.4.5.28	78104
1g6aA	271	65.17	e.3.1.1	42704
2fbiA	142	66.00	a.4.5.28	133246
2bjfA	329	66.50		
1j3wA	163	66.52	d.110.7.1	90833
2grjA	192	66.56		
3cihA	739	67.31		
1m07A	111	68.95	d.5.1.1	78328
2b5aA	77	78.40	a.35.1.3	127882
1m6yA	301	79.26	a.60.13.1,c.66.1.23	78716,78717
1k8kG	151	81.17	a.118.13.1	68313
1adrA	76	81.76	a.35.1.2	17042
2astA	159	81.79		
2p1mA	163	83.10		
2fz0A	149	84.58		
1omoA	322	85.86	c.2.1.13	104017
2a61A	145	86.98	a.4.5.28	126187
1b0nA	111	88.34	a.34.1.1,a.35.1.3	17001,17064
2cro	71	88.49		
1yn5A	103	89.62