# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.71e-11	d.98.1.1	67267
2g2uB	165	1.73e-11	d.98.1.1	134541
2h27A	73	12.99	a.4.13.2	135993
2o8xA	70	14.70		
2gxgA	146	19.02		
3bj6A	152	24.39		
1vjfA	180	29.40	d.116.1.1	100809
2agmA	167	29.85		
3ccgA	190	31.51		
1o17A	345	31.75	a.46.2.1,c.27.1.1	80765,80766
1lvaA	258	33.72	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2rdpA	150	34.93		
2pvaA	345	36.17	d.153.1.3	41850
1y7yA	74	37.17	a.35.1.3	122729
1utxA	66	39.79	a.35.1.3	108034
2a0mA	316	40.64	c.42.1.1	125960
3boqA	160	42.44		
2fbhA	146	43.14	a.4.5.28	133245
3bjaA	139	43.40		
2croA	71	43.79	a.35.1.2	17038
3bddA	142	44.56		
2guzA	71	44.67		
1jj2Q	154	45.41	d.55.1.1	63102
1adrA	76	45.77	a.35.1.2	17042
1r69A	69	46.04	a.35.1.2	17028
2q88A	257	46.13		
1yn5A	103	51.92		
2b5aA	77	53.38	a.35.1.3	127882
2p2sA	336	59.66		
3cjnA	162	61.63		
2bv6A	142	64.68		
2grjA	192	65.36		
2cro	71	66.83		
1mtpA	323	67.32	e.1.1.1	85107
2fa5A	162	67.94		
1m07A	111	68.07	d.5.1.1	78328
2nnnA	140	69.56		
2astA	159	71.59		
1vkiA	181	71.95	d.116.1.1	108664
1gq6A	313	72.31	c.42.1.1	70341
1vp6A	138	72.55	b.82.3.2	113939
1ituA	369	72.67	c.1.9.7	71423
1wdvA	152	74.78	d.116.1.1	114539
1k8kG	151	75.19	a.118.13.1	68313
1omoA	322	76.32	c.2.1.13	104017
2nyxA	168	77.38		
1y3tA	337	77.63	b.82.1.5	122600
2zceA	291	77.96		
1b0nA	111	78.53	a.34.1.1,a.35.1.3	17001,17064
3broA	141	79.16		
2dvwB	83	79.48		
1vd6A	224	81.80	c.1.18.3	119991
1wnaA	131	84.05	d.319.1.1	121091
1j3wA	163	85.71	d.110.7.1	90833
2p1mA	163	86.10