# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.52e-10	d.98.1.1	134541
1jtgB	165	1.94e-10	d.98.1.1	67267
2agmA	167	5.199		
2gxgA	146	19.73		
1xipA	388	29.96	b.69.14.1	115360
2nyxA	168	32.54		
2grjA	192	33.49		
1y3tA	337	36.92	b.82.1.5	122600
2fbkA	181	38.56	a.4.5.28	133247
2fa5A	162	39.27		
2cvzA	289	40.93	a.100.1.1,c.2.1.6	130890,130891
3bjaA	139	43.40		
1hkqA	132	46.52	a.4.5.10	83555
2h27A	73	48.25	a.4.13.2	135993
2o8xA	70	53.10		
1r69A	69	55.37	a.35.1.2	17028
3bj6A	152	55.90		
2croA	71	55.94	a.35.1.2	17038
3boqA	160	56.94		
1utxA	66	57.35	a.35.1.3	108034
1repC	251	62.00	a.4.5.10,a.4.5.10	16125,16126
2bnmA	198	68.13	a.35.1.3,b.82.1.10	128835,128836
1m07A	111	70.05	d.5.1.1	78328
1wnaA	131	71.60	d.319.1.1	121091
2cro	71	72.94		
1mv8A	436	73.06	a.100.1.4,c.2.1.6,c.26.3.1	85128,85129,85130
3beyA	96	73.53		
1y7yA	74	76.98	a.35.1.3	122729
3cjxA	165	79.51		
2p1mA	163	82.31		
2ijcA	145	84.13	a.152.1.3	137465
1adrA	76	88.88	a.35.1.2	17042