# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.29e-10	d.98.1.1	134541
1jtgB	165	1.36e-10	d.98.1.1	67267
1hkqA	132	10.17	a.4.5.10	83555
2grjA	192	11.57		
2agmA	167	12.00		
2gxgA	146	14.38		
2h27A	73	17.99	a.4.13.2	135993
3boqA	160	20.60		
3bj6A	152	20.77		
1xipA	388	21.38	b.69.14.1	115360
1y3tA	337	22.45	b.82.1.5	122600
2o8xA	70	22.55		
3bddA	142	28.28		
3bjaA	139	28.72		
2rdpA	150	30.39		
2nyxA	168	33.72		
2fbkA	181	40.43	a.4.5.28	133247
1t94A	459	45.89	d.240.1.1,e.8.1.7	106701,106702
1r69A	69	47.60	a.35.1.2	17028
1utxA	66	49.21	a.35.1.3	108034
1y7yA	74	55.85	a.35.1.3	122729
2fa5A	162	58.08		
2guzA	71	58.24		
2bv6A	142	63.11		
1j3wA	163	64.48	d.110.7.1	90833
2nnnA	140	67.22		
1b0nA	111	67.23	a.34.1.1,a.35.1.3	17001,17064
1vd6A	224	69.44	c.1.18.3	119991
2b5aA	77	69.52	a.35.1.3	127882
3broA	141	73.39		
1cx4A	305	74.23	b.82.3.2,b.82.3.2	59099,59100
2fz0A	149	76.07		
2qwwA	154	76.80		
2fbhA	146	77.16	a.4.5.28	133245
1iufA	144	82.90	a.4.1.7,a.4.1.7	71439,71440
2croA	71	83.42	a.35.1.2	17038
1s3jA	155	83.81	a.4.5.28	98437
2bnmA	198	85.07	a.35.1.3,b.82.1.10	128835,128836
2fbiA	142	86.99	a.4.5.28	133246