Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2g2uB	1.7505e-07	2g2uB/T0399-2g2uB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
1jtgB	1.8845e-07	1jtgB/T0399-1jtgB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
2o8xA	6.6764e+00	2o8xA/T0399-2o8xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h36X	7.5364e+00	2h36X/T0399-2h36X-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fyxA	8.5742e+00	2fyxA/T0399-2fyxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.57.1
2h27A	2.1905e+01	2h27A/T0399-2h27A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.13.2
2fbhA	2.2069e+01	2fbhA/T0399-2fbhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.28
2a6mA	2.5397e+01	2a6mA/T0399-2a6mA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.57.1
2f5gA	3.2078e+01	2f5gA/T0399-2f5gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.57.1
1r69	3.3980e+01	1r69/T0399-1r69-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hr3A	3.7169e+01	2hr3A/T0399-2hr3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.28
1igtB	3.7199e+01	1igtB/T0399-1igtB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tygB	3.8844e+01	1tygB/T0399-1tygB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.15.3.2
1mt6A	4.3583e+01	1mt6A/T0399-1mt6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
2f1wA	4.5298e+01	2f1wA/T0399-2f1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vmbA	4.6252e+01	1vmbA/T0399-1vmbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.14.1
1igtD	5.0869e+01	1igtD/T0399-1igtD-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3boqA	5.5070e+01	3boqA/T0399-3boqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2jm6A	5.5078e+01	2jm6A/T0399-2jm6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oaiA	5.5614e+01	2oaiA/T0399-2oaiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001