# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 8.71e-07 d.98.1.1 134541 1jtgB 165 1.29e-06 d.98.1.1 67267 2o8xA 70 1.625 1cp3A 277 2.213 c.17.1.1 30992 1r69 69 3.226 2h36X 112 3.602 1adrA 76 4.608 a.35.1.2 17042 2bf5A 98 5.280 d.137.1.1 128405 1tygB 87 6.345 d.15.3.2 107455 2ef8A 84 6.589 2bnmA 198 6.780 a.35.1.3,b.82.1.10 128835,128836 2h27A 73 6.889 a.4.13.2 135993 1utxA 66 7.748 a.35.1.3 108034 1zud2 66 8.518 1qtnA 164 8.930 c.17.1.1 30999 2fbhA 146 10.68 a.4.5.28 133245 2ismA 352 10.69 1jkoC 52 10.81 a.4.1.2 66809 1r69A 69 11.14 a.35.1.2 17028 2b5aA 77 11.62 a.35.1.3 127882 2q88A 257 12.41 2ppxA 99 12.51 2cu3A 64 12.88 2glxA 332 14.70 2o4uX 334 15.31 3bemA 218 16.16 1or7A 194 16.34 a.4.13.2,a.177.1.1 87332,87333 1lliA 92 16.41 a.35.1.2 17025 1lj9A 144 16.80 a.4.5.28 78035 1lmb3 92 18.57 2fyxA 143 19.46 d.58.57.1 134411 3bs3A 76 19.52 3ceaA 346 20.04 2cro 71 21.09 1y7yA 74 22.05 a.35.1.3 122729 2ntiA 249 23.93 3c1aA 315 24.05 1lnwA 147 25.25 a.4.5.28 78104 1fqvD 149 25.25 a.157.1.1,d.42.1.1 19263,38667 3b7hA 78 25.93 1nox 205 26.05 2f1sA 186 26.17 1vmbA 140 27.00 d.58.14.1 113672 1mrzA 293 27.83 b.43.5.1,c.26.1.3 91452,91453 2fa5A 162 29.34 2pexA 153 30.73 2hr3A 147 31.48 a.4.5.28 136678 1rp3A 239 35.42 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1b04A 318 35.44 d.142.2.2 41579 1gcuA 295 35.72 c.2.1.3,d.81.1.4 30063,39978 2jspA 87 36.72 2ejhA 255 38.04 2bbrA 195 38.55 1vjfA 180 38.96 d.116.1.1 100809 3bddA 142 39.35 1z2nX 324 39.84 3b40A 417 41.39 2o35A 105 42.45 1yqgA 263 42.81 2qwwA 154 43.61 2f5gA 133 44.99 d.58.57.1 132991 2fa1A 160 45.39 d.190.1.2 133182 2iorA 235 46.47 2hpaA 342 46.72 c.60.1.2 33985 2vadA 223 46.97 1bouA 139 47.50 a.88.1.1 18521 2i5gA 325 48.41 2iwxA 214 50.65 d.122.1.1 137758 2d5vA 164 51.17 1sedA 117 51.56 a.219.1.1 105449 2rcyA 262 53.27 2g17A 337 53.49 c.2.1.3,d.81.1.1 134512,134513 2iskA 230 53.54 1rwsA 77 54.57 d.15.3.2 97991 2j6bA 109 55.21 d.321.1.1 138078 1mqoA 227 56.14 d.157.1.1 103846 3broA 141 56.28 1gh2A 107 57.19 c.47.1.1 60515 2q49A 359 58.09 c.2.1.3,d.81.1.1 139831,139832 1ef4A 55 58.13 a.4.11.1 16272 1zh8A 340 58.46 c.2.1.3,d.81.1.5 125077,125078 1z00B 84 58.77 a.60.2.5 124295 1vhtA 218 62.02 c.37.1.1 100700 1b2sD 90 63.48 c.9.1.1 30837 1a9xB 379 63.91 c.8.3.1,c.23.16.1 30732,31409 2croA 71 64.55 a.35.1.2 17038 1vj7A 393 65.17 a.211.1.1,d.218.1.8 100801,100802 1ufmA 84 65.87 a.4.5.47 107816 1vz0A 230 66.09 a.4.14.1,d.268.1.1 108929,108930 1wdvA 152 66.17 d.116.1.1 114539 1ay7B 89 66.93 c.9.1.1 30836 1a19A 90 67.02 c.9.1.1 30831 1b3sD 90 68.59 c.9.1.1 30846 2freA 200 70.39 d.90.1.1 133985 1zmaA 118 70.50 c.47.1.1 125354 1aiu 105 70.51 1b4bA 71 70.71 d.74.2.1 39718 2ho3A 325 72.65 2nrrA 159 76.32 2dznB 82 77.10 1yuwA 554 77.50 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1rydA 387 77.75 c.2.1.3,d.81.1.5 118801,118802 2astA 159 78.51 1wuaA 375 79.76 c.55.1.1,c.55.1.1 121281,121282 1r71A 178 80.17 a.4.14.1 104823 1f9mA 112 80.56 c.47.1.1 32736 1byqA 228 80.66 d.122.1.1 41100 1vkiA 181 81.47 d.116.1.1 108664 1ejjA 511 82.87 c.105.1.1,c.76.1.3 59422,59423 2rdpA 150 83.51 1dxkA 227 85.00 d.157.1.1 42036 1m4tA 392 85.45 c.95.1.1,c.95.1.1 78617,78618 1atnA 373 86.23 c.55.1.1,c.55.1.1 33437,33438 1y9qA 192 88.82 a.35.1.8,b.82.1.15 116592,116593 1ta8A 332 88.90 d.142.2.2 112375 2govA 195 89.53 d.60.1.4 135447