# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	8.13e-06	d.98.1.1	134541
1jtgB	165	1.41e-05	d.98.1.1	67267
2fyxA	143	1.328	d.58.57.1	134411
2o8xA	70	3.307		
2h36X	112	4.644		
2f5gA	133	9.384	d.58.57.1	132991
2h27A	73	11.59	a.4.13.2	135993
1mt6A	280	11.66	b.76.2.1,b.85.7.1	79446,79447
2a6mA	155	12.14	d.58.57.1	126287
1tygB	87	12.94	d.15.3.2	107455
1r69	69	13.01		
2q88A	257	14.37		
2ejhA	255	16.13		
1z2nX	324	17.78		
2fbhA	146	18.28	a.4.5.28	133245
1mqoA	227	20.74	d.157.1.1	103846
1adrA	76	21.91	a.35.1.2	17042
1yqgA	263	23.98		
2iwxA	214	24.61	d.122.1.1	137758
3bemA	218	24.63		
1vkiA	181	25.22	d.116.1.1	108664
1vjfA	180	26.33	d.116.1.1	100809
2ef8A	84	26.70		
1utxA	66	28.24	a.35.1.3	108034
1h67A	108	31.10	a.40.1.1	65643
2glxA	332	31.40		
1vmbA	140	31.51	d.58.14.1	113672
1th8A	145	31.68	d.122.1.3	106908
2ismA	352	32.01		
2hpaA	342	33.20	c.60.1.2	33985
2bnmA	198	35.45	a.35.1.3,b.82.1.10	128835,128836
1vfrA	218	35.51	d.90.1.1	40247
1zud2	66	36.33		
2b5aA	77	36.35	a.35.1.3	127882
2jspA	87	39.50		
2fxuA	375	40.38	c.55.1.1,c.55.1.1	134340,134341
1rp3A	239	40.54	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2hr3A	147	41.01	a.4.5.28	136678
2vjvA	159	42.90		
1lmb3	92	44.44		
2bf5A	98	44.65	d.137.1.1	128405
2jmkA	111	45.69		
2ppxA	99	46.68		
2iorA	235	46.99		
1wuaA	375	47.16	c.55.1.1,c.55.1.1	121281,121282
1dxkA	227	47.67	d.157.1.1	42036
3broA	141	48.08		
1nstA	325	49.33	c.37.1.5	31951
2cxyA	125	49.96		
1lj9A	144	51.26	a.4.5.28	78035
1lliA	92	52.40	a.35.1.2	17025
1or7A	194	52.73	a.4.13.2,a.177.1.1	87332,87333
1fs1B	141	53.22	a.157.1.1,d.42.1.1	19252,38664
1r69A	69	53.77	a.35.1.2	17028
2breA	219	54.37	d.122.1.1	128994
2fa1A	160	56.20	d.190.1.2	133182
1vhtA	218	56.89	c.37.1.1	100700
2nrrA	159	58.25		
2pefA	373	58.57		
1qz5A	375	59.30	c.55.1.1,c.55.1.1	96614,96615
2gauA	232	59.45	a.4.5.4,b.82.3.2	134894,134895
2ntiA	249	63.55		
2f1sA	186	65.05		
3bs3A	76	69.72		
1nox	205	69.74		
3c1aA	315	70.38		
1cp3A	277	71.34	c.17.1.1	30992
2g17A	337	72.31	c.2.1.3,d.81.1.1	134512,134513
1jjtA	228	74.53	d.157.1.1	63139
2bv6A	142	75.57		
2o4uX	334	76.84		
1ay7B	89	81.95	c.9.1.1	30836
1rxzA	245	84.43	d.131.1.2,d.131.1.2	98067,98068
2ho3A	325	88.08		
2cro	71	88.39		
1b2sD	90	89.59	c.9.1.1	30837
3ceaA	346	89.61