# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	9.68e-06	d.98.1.1	134541
1jtgB	165	1.31e-05	d.98.1.1	67267
2fyxA	143	1.778	d.58.57.1	134411
2o8xA	70	3.266		
1mt6A	280	4.464	b.76.2.1,b.85.7.1	79446,79447
2fbhA	146	5.942	a.4.5.28	133245
2a6mA	155	8.094	d.58.57.1	126287
1r69	69	8.728		
2f5gA	133	9.474	d.58.57.1	132991
1tygB	87	9.505	d.15.3.2	107455
2h27A	73	10.02	a.4.13.2	135993
2hr3A	147	13.43	a.4.5.28	136678
2q88A	257	15.19		
1adrA	76	16.69	a.35.1.2	17042
1utxA	66	19.73	a.35.1.3	108034
2ismA	352	20.88		
2h36X	112	20.88		
2ppxA	99	22.43		
1vmbA	140	22.48	d.58.14.1	113672
3bemA	218	23.54		
2b5aA	77	26.12	a.35.1.3	127882
3broA	141	26.82		
1yqgA	263	26.88		
2bnmA	198	28.60	a.35.1.3,b.82.1.10	128835,128836
2ef8A	84	29.57		
3boqA	160	29.84		
2jspA	87	30.50		
1lj9A	144	32.71	a.4.5.28	78035
1h67A	108	32.88	a.40.1.1	65643
2gauA	232	32.99	a.4.5.4,b.82.3.2	134894,134895
1r69A	69	35.73	a.35.1.2	17028
2bv6A	142	37.06		
1zud2	66	37.34		
2vjvA	159	37.91		
1rp3A	239	38.12	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
1vfrA	218	38.79	d.90.1.1	40247
3bddA	142	39.44		
1vkiA	181	39.83	d.116.1.1	108664
2hpaA	342	40.20	c.60.1.2	33985
1nstA	325	43.84	c.37.1.5	31951
1nox	205	44.95		
1mqoA	227	45.26	d.157.1.1	103846
2nrrA	159	49.21		
2pexA	153	49.24		
3bs3A	76	50.52		
1vhtA	218	50.90	c.37.1.1	100700
1lmb3	92	53.17		
1lliA	92	53.37	a.35.1.2	17025
2cro	71	53.57		
2glxA	332	53.77		
1lnwA	147	54.04	a.4.5.28	78104
2cxyA	125	54.16		
2i5gA	325	56.74		
1or7A	194	58.30	a.4.13.2,a.177.1.1	87332,87333
1fs1B	141	59.74	a.157.1.1,d.42.1.1	19252,38664
3bjaA	139	60.32		
2f1sA	186	60.50		
2aqjA	538	61.99		
1z2nX	324	64.32		
2rdpA	150	65.51		
3b7hA	78	66.39		
2fbiA	142	68.02	a.4.5.28	133246
1cp3A	277	68.45	c.17.1.1	30992
1s1hM	132	68.85	i.1.1.1	105165
2aawA	222	70.83	a.45.1.1,c.47.1.5	126496,126497
2frhA	127	73.53	a.4.5.28	133988
2qwwA	154	74.69		
3c1aA	315	75.27		
2fa1A	160	77.04	d.190.1.2	133182
2iwxA	214	77.24	d.122.1.1	137758
2iskA	230	77.88		
2o4uX	334	78.74		
2pefA	373	78.87		
2bf5A	98	78.88	d.137.1.1	128405
2ejhA	255	79.44		
1noxA	205	79.72	d.90.1.1	40242
1zybA	232	82.18	a.4.5.4,b.82.3.2	125815,125816
1th8A	145	85.56	d.122.1.3	106908
2gxgA	146	85.77