# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	3.56e-06	d.98.1.1	134541
1jtgB	165	4.94e-06	d.98.1.1	67267
2fyxA	143	1.339	d.58.57.1	134411
2o8xA	70	2.977		
1mt6A	280	5.619	b.76.2.1,b.85.7.1	79446,79447
1tygB	87	8.887	d.15.3.2	107455
1r69	69	9.607		
2f5gA	133	9.914	d.58.57.1	132991
2a6mA	155	10.20	d.58.57.1	126287
2h27A	73	10.59	a.4.13.2	135993
2fbhA	146	10.85	a.4.5.28	133245
1vmbA	140	14.00	d.58.14.1	113672
2q88A	257	15.08		
2h36X	112	15.45		
1adrA	76	16.34	a.35.1.2	17042
3bemA	218	23.28		
2ef8A	84	23.51		
1h67A	108	25.52	a.40.1.1	65643
1utxA	66	25.53	a.35.1.3	108034
2ismA	352	25.74		
2ppxA	99	30.66		
1z2nX	324	31.32		
2bnmA	198	31.90	a.35.1.3,b.82.1.10	128835,128836
1yqgA	263	32.13		
2gauA	232	32.43	a.4.5.4,b.82.3.2	134894,134895
2nrrA	159	32.88		
2b5aA	77	32.89	a.35.1.3	127882
2jspA	87	33.37		
1vfrA	218	33.95	d.90.1.1	40247
2ejhA	255	34.14		
2fa1A	160	35.13	d.190.1.2	133182
2hr3A	147	36.10	a.4.5.28	136678
1mqoA	227	37.08	d.157.1.1	103846
2vjvA	159	39.00		
2iwxA	214	39.23	d.122.1.1	137758
1zud2	66	40.14		
1r69A	69	42.14	a.35.1.2	17028
1lj9A	144	42.42	a.4.5.28	78035
1lmb3	92	44.14		
1vhtA	218	44.35	c.37.1.1	100700
1or7A	194	46.58	a.4.13.2,a.177.1.1	87332,87333
3broA	141	46.88		
1vkiA	181	48.22	d.116.1.1	108664
1nox	205	48.62		
1nstA	325	50.03	c.37.1.5	31951
2bf5A	98	51.04	d.137.1.1	128405
1fs1B	141	51.34	a.157.1.1,d.42.1.1	19252,38664
2jmkA	111	53.35		
2f1sA	186	57.88		
3boqA	160	58.11		
2bv6A	142	58.62		
2hpaA	342	59.64	c.60.1.2	33985
3bddA	142	60.67		
1rp3A	239	60.67	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
1lliA	92	61.15	a.35.1.2	17025
2i5gA	325	62.19		
2g17A	337	62.50	c.2.1.3,d.81.1.1	134512,134513
3bs3A	76	65.82		
1s1hM	132	66.93	i.1.1.1	105165
2cro	71	67.42		
1th8A	145	73.61	d.122.1.3	106908
2fxuA	375	74.11	c.55.1.1,c.55.1.1	134340,134341
2cxyA	125	74.91		
1jjtA	228	75.01	d.157.1.1	63139
1y7yA	74	76.86	a.35.1.3	122729
2ntiA	249	77.97		
1a41A	234	80.95	d.163.1.2	42174
3c1aA	315	81.47		
2glxA	332	85.33		
1ykiA	217	86.21	d.90.1.1	123520
1wuaA	375	86.22	c.55.1.1,c.55.1.1	121281,121282
2aawA	222	87.97	a.45.1.1,c.47.1.5	126496,126497
2pefA	373	88.19