# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	9.68e-05	d.98.1.1	134541
1jtgB	165	0.000116	d.98.1.1	67267
2fyxA	143	3.227	d.58.57.1	134411
2o8xA	70	5.826		
2h36X	112	10.06		
2a6mA	155	11.92	d.58.57.1	126287
2hr3A	147	15.39	a.4.5.28	136678
1jkoC	52	17.21	a.4.1.2	66809
2h27A	73	19.07	a.4.13.2	135993
3boqA	160	20.38		
3bddA	142	26.17		
2vjvA	159	27.73		
1r69	69	30.25		
2fbhA	146	30.92	a.4.5.28	133245
1eb7A	323	31.35	a.3.1.5,a.3.1.5	59404,59405
3broA	141	33.16		
3bemA	218	33.19		
2f5gA	133	36.01	d.58.57.1	132991
2h0uA	217	36.67		
1tygB	87	38.11	d.15.3.2	107455
2ef8A	84	38.71		
2bnmA	198	39.19	a.35.1.3,b.82.1.10	128835,128836
1vfrA	218	41.01	d.90.1.1	40247
2pexA	153	45.78		
2b5aA	77	47.54	a.35.1.3	127882
2rdpA	150	49.60		
1or7A	194	54.84	a.4.13.2,a.177.1.1	87332,87333
1lmb3	92	55.02		
1z00B	84	56.99	a.60.2.5	124295
1adrA	76	57.79	a.35.1.2	17042
1lnwA	147	57.91	a.4.5.28	78104
1lj9A	144	58.38	a.4.5.28	78035
2cro	71	58.97		
6paxA	133	61.90	a.4.1.5,a.4.1.5	64758,64759
2dofA	85	62.81		
3b7hA	78	62.98		
1lliA	92	63.86	a.35.1.2	17025
3bjaA	139	64.07		
1utxA	66	65.92	a.35.1.3	108034
1vhtA	218	66.12	c.37.1.1	100700
2f1sA	186	66.16		
2fbkA	181	66.29	a.4.5.28	133247
1v32A	101	66.71	a.42.1.1	100277
1vj7A	393	75.29	a.211.1.1,d.218.1.8	100801,100802
1rthA	560	76.07	c.55.3.1,e.8.1.2	33576,43028
1b0nA	111	76.70	a.34.1.1,a.35.1.3	17001,17064
1qtnA	164	76.87	c.17.1.1	30999
3bs3A	76	78.05		
2iwxA	214	78.47	d.122.1.1	137758
1mqoA	227	79.95	d.157.1.1	103846
1on2A	142	80.41	a.4.5.24,a.76.1.1	87103,87104
1y7yA	74	80.73	a.35.1.3	122729
2gxgA	146	81.33		
2bv6A	142	87.01		
2fbiA	142	87.09	a.4.5.28	133246
2amyA	246	88.76	c.108.1.10	127026