# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.83e-05	d.98.1.1	67267
2g2uB	165	2.23e-05	d.98.1.1	134541
2fyxA	143	3.583	d.58.57.1	134411
2fbhA	146	4.085	a.4.5.28	133245
2h36X	112	4.722		
2o8xA	70	5.244		
1tygB	87	9.477	d.15.3.2	107455
1r69	69	12.99		
2f5gA	133	16.57	d.58.57.1	132991
2hr3A	147	17.21	a.4.5.28	136678
1mt6A	280	19.43	b.76.2.1,b.85.7.1	79446,79447
3boqA	160	19.77		
2ismA	352	21.62		
2h27A	73	22.61	a.4.13.2	135993
2a6mA	155	22.96	d.58.57.1	126287
2iorA	235	24.07		
2fa1A	160	24.71	d.190.1.2	133182
1z2nX	324	24.85		
1utxA	66	25.41	a.35.1.3	108034
2iwxA	214	26.37	d.122.1.1	137758
2ejhA	255	27.05		
2bnmA	198	28.70	a.35.1.3,b.82.1.10	128835,128836
1adrA	76	29.97	a.35.1.2	17042
2q88A	257	30.37		
2ef8A	84	30.70		
3bemA	218	32.02		
1lnwA	147	32.07	a.4.5.28	78104
2b5aA	77	33.73	a.35.1.3	127882
2rdpA	150	33.79		
2pexA	153	37.46		
1mqoA	227	37.88	d.157.1.1	103846
1vmbA	140	39.91	d.58.14.1	113672
1y7yA	74	40.12	a.35.1.3	122729
1vkiA	181	42.69	d.116.1.1	108664
1lmb3	92	43.16		
3b40A	417	43.30		
2nrrA	159	43.74		
1vfrA	218	44.50	d.90.1.1	40247
1or7A	194	44.58	a.4.13.2,a.177.1.1	87332,87333
2ppxA	99	46.54		
2nyxA	168	46.57		
2glxA	332	47.29		
3c1aA	315	47.44		
1sedA	117	47.47	a.219.1.1	105449
1fqvD	149	47.54	a.157.1.1,d.42.1.1	19263,38667
1lj9A	144	47.63	a.4.5.28	78035
1zud2	66	49.44		
2e01A	457	49.73		
3broA	141	50.23		
2aqjA	538	50.99		
1r69A	69	51.22	a.35.1.2	17028
2hpaA	342	51.57	c.60.1.2	33985
1vjfA	180	52.05	d.116.1.1	100809
2jspA	87	53.37		
3bddA	142	54.88		
2fxuA	375	56.20	c.55.1.1,c.55.1.1	134340,134341
1yqgA	263	58.28		
1wuaA	375	59.18	c.55.1.1,c.55.1.1	121281,121282
1dxkA	227	59.93	d.157.1.1	42036
2zcwA	202	63.84		
2ntiA	249	64.58		
3bs3A	76	66.11		
2bv6A	142	68.35		
1lliA	92	69.33	a.35.1.2	17025
1nox	205	69.83		
1th8A	145	70.83	d.122.1.3	106908
2g17A	337	71.08	c.2.1.3,d.81.1.1	134512,134513
2i5gA	325	71.26		
3bjaA	139	71.47		
2cro	71	72.23		
1vhtA	218	73.36	c.37.1.1	100700
3b7hA	78	73.62		
1qz5A	375	74.06	c.55.1.1,c.55.1.1	96614,96615
1h67A	108	75.32	a.40.1.1	65643
2fbiA	142	76.44	a.4.5.28	133246
2cohA	202	76.63	a.4.5.4,b.82.3.2	130677,130678
1vj7A	393	77.13	a.211.1.1,d.218.1.8	100801,100802
2breA	219	77.33	d.122.1.1	128994
2frhA	127	78.26	a.4.5.28	133988
2o4uX	334	78.96		
1b4bA	71	79.79	d.74.2.1	39718
2cu3A	64	80.84		
1s3jA	155	80.89	a.4.5.28	98437
1nstA	325	81.74	c.37.1.5	31951
2ikkA	173	82.16		
2gxgA	146	83.65		
2vjvA	159	84.03		
2fa5A	162	84.94		
2bf5A	98	87.54	d.137.1.1	128405
2cxyA	125	89.93