# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 8.07e-06 d.98.1.1 134541 1jtgB 165 1.23e-05 d.98.1.1 67267 1mt6A 280 0.3667 b.76.2.1,b.85.7.1 79446,79447 2fyxA 143 0.8961 d.58.57.1 134411 3boqA 160 1.297 2aaoA 166 3.149 1y1xA 191 4.137 a.39.1.8 116374 2fbhA 146 4.536 a.4.5.28 133245 1bu6O 501 4.669 c.55.1.4,c.55.1.4 33499,33500 2h36X 112 7.483 2q88A 257 7.557 2bv6A 142 8.222 1wdcC 156 10.41 a.39.1.5 17317 2o8xA 70 11.27 2hjsA 340 11.93 c.2.1.3,d.81.1.1 136547,136548 1efpB 252 13.82 c.26.2.3 31636 2vr4A 846 15.50 2pnqA 467 15.89 1ggzA 148 17.15 a.39.1.5 70176 2a6mA 155 17.31 d.58.57.1 126287 1yq2A 1024 17.42 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2f5gA 133 18.07 d.58.57.1 132991 1l9cA 389 18.53 c.3.1.2,d.16.1.3 77815,77816 9gafA 295 18.70 d.153.1.5 42008 2p8bA 369 18.97 1tygB 87 19.21 d.15.3.2 107455 2pexA 153 19.96 3c3dA 311 21.56 1vkiA 181 21.79 d.116.1.1 108664 1vmbA 140 22.80 d.58.14.1 113672 2dqaA 124 23.05 1uohA 226 23.05 d.211.1.1 99690 2h0uA 217 23.11 2f1sA 186 24.71 1g61A 228 24.95 d.126.1.1 41126 2e01A 457 25.87 2hr3A 147 25.94 a.4.5.28 136678 2ix4A 431 25.95 c.95.1.1,c.95.1.1 137759,137760 2cn3A 737 26.13 2obhA 143 26.76 1a9xB 379 26.76 c.8.3.1,c.23.16.1 30732,31409 1qasA 622 27.29 a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1fqvD 149 27.34 a.157.1.1,d.42.1.1 19263,38667 2gv5A 161 27.88 1ncx 162 28.02 1fxlA 167 28.27 d.58.7.1,d.58.7.1 39183,39184 2p2sA 336 29.21 2amyA 246 29.65 c.108.1.10 127026 2ntkA 222 32.05 d.153.2.1 138583 1r69 69 34.02 1m4tA 392 34.53 c.95.1.1,c.95.1.1 78617,78618 1zh5A 195 35.10 a.4.5.46,d.58.7.1 125073,125074 2dkfA 431 38.10 3bemA 218 38.49 1iynA 295 40.05 a.93.1.1 90722 1th8A 145 41.64 d.122.1.3 106908 2rhsA 294 43.01 1cfyA 143 43.46 d.109.1.2 40858 2i5gA 325 44.78 1dqpA 230 45.08 c.61.1.1 34069 2bl0C 142 45.91 2ftwA 521 45.93 b.92.1.3,c.1.9.6 134083,134084 2h27A 73 46.25 a.4.13.2 135993 1mtyD 512 46.65 a.25.1.2 16742 1wdcB 156 48.28 a.39.1.5 17302 2o5gA 148 48.48 1vjfA 180 48.57 d.116.1.1 100809 1attA 421 48.71 e.1.1.1 42638 1mb4A 370 50.46 c.2.1.3,d.81.1.1 78908,78909 2bnmA 198 50.66 a.35.1.3,b.82.1.10 128835,128836 1rhsA 296 51.58 c.46.1.2,c.46.1.2 32703,32704 1sekA 378 52.17 e.1.1.1 42675 2rdpA 150 52.77 1jtaA 361 52.78 b.80.1.1 71859 2fa1A 160 53.45 d.190.1.2 133182 1idkA 359 53.94 b.80.1.2 28025 1fs7A 485 54.99 a.138.1.3 19691 1z91A 147 56.81 a.4.5.28 124736 2ppxA 99 56.98 1topA 162 57.77 a.39.1.5 17223 2breA 219 58.02 d.122.1.1 128994 1c4zA 358 58.20 d.148.1.1 41766 1lnwA 147 58.44 a.4.5.28 78104 1utxA 66 60.03 a.35.1.3 108034 1p7tA 731 63.67 c.1.13.1 94319 2nyxA 168 63.76 1aym1 285 63.95 2ha9A 446 64.07 2h09A 155 64.62 1yudA 170 64.83 b.82.1.16 124046 1or7A 194 65.26 a.4.13.2,a.177.1.1 87332,87333 2b7kA 200 65.53 c.47.1.10 128042 1s3jA 155 67.41 a.4.5.28 98437 1nstA 325 68.64 c.37.1.5 31951 2nrrA 159 69.26 1xrtA 467 69.71 b.92.1.3,c.1.9.6 122258,122259 3ceaA 346 70.21 1imbA 277 70.45 e.7.1.1 42957 1sc3A 178 70.86 c.17.1.1 105416 3bs6A 280 71.73 1dseA 292 74.15 a.93.1.1 59130 3bqfA 194 75.05 1jmxA 494 75.38 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1eyeA 280 75.44 c.1.21.1 29672 2rh1A 500 76.29 2vjvA 159 77.28 1im4A 221 77.67 e.8.1.7 62581 1adrA 76 78.41 a.35.1.2 17042 1yqgA 263 78.76 2p4pA 86 79.23 2nxoA 291 79.41 2ef8A 84 79.51 1gvjA 146 81.02 a.4.5.21 90525 2b5aA 77 81.04 a.35.1.3 127882 2govA 195 82.17 d.60.1.4 135447 2f3yA 148 82.21 1gof 639 82.78 2d5vA 164 83.24 1a2xA 159 87.71 a.39.1.5 17251 1lmb3 92 89.10 2jspA 87 89.52