# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	4.39e-06	d.98.1.1	67267
2g2uB	165	5.21e-06	d.98.1.1	134541
2fyxA	143	2.200	d.58.57.1	134411
2fbhA	146	3.801	a.4.5.28	133245
2o8xA	70	4.422		
2h36X	112	7.131		
1r69	69	8.049		
1tygB	87	8.751	d.15.3.2	107455
1vmbA	140	11.02	d.58.14.1	113672
1mt6A	280	11.95	b.76.2.1,b.85.7.1	79446,79447
3boqA	160	12.92		
2f5gA	133	13.51	d.58.57.1	132991
2a6mA	155	14.41	d.58.57.1	126287
2hr3A	147	16.18	a.4.5.28	136678
2h27A	73	16.52	a.4.13.2	135993
1utxA	66	18.39	a.35.1.3	108034
2bnmA	198	22.33	a.35.1.3,b.82.1.10	128835,128836
1adrA	76	23.42	a.35.1.2	17042
3bemA	218	23.94		
2hpaA	342	24.55	c.60.1.2	33985
2rdpA	150	25.27		
2b5aA	77	25.34	a.35.1.3	127882
2q88A	257	25.72		
3b40A	417	27.00		
2iorA	235	27.05		
2iwxA	214	27.08	d.122.1.1	137758
1or7A	194	27.15	a.4.13.2,a.177.1.1	87332,87333
1lnwA	147	27.92	a.4.5.28	78104
1y7yA	74	29.20	a.35.1.3	122729
2ppxA	99	30.93		
2fa1A	160	31.63	d.190.1.2	133182
2ef8A	84	31.64		
1vkiA	181	33.82	d.116.1.1	108664
1lmb3	92	34.38		
2gauA	232	35.06	a.4.5.4,b.82.3.2	134894,134895
2nyxA	168	36.51		
2ismA	352	37.45		
1r69A	69	37.47	a.35.1.2	17028
2nrrA	159	37.85		
1fqvD	149	38.52	a.157.1.1,d.42.1.1	19263,38667
1z2nX	324	40.23		
1vfrA	218	40.90	d.90.1.1	40247
2glxA	332	41.60		
3bddA	142	42.08		
1sedA	117	42.61	a.219.1.1	105449
1lj9A	144	43.14	a.4.5.28	78035
1h67A	108	44.50	a.40.1.1	65643
2pexA	153	45.20		
1yqgA	263	48.00		
3bs3A	76	49.53		
2e01A	457	50.60		
3b7hA	78	52.02		
2cro	71	52.44		
2i5gA	325	53.90		
1zud2	66	54.65		
2fa5A	162	54.94		
1mqoA	227	54.95	d.157.1.1	103846
2zcwA	202	55.30		
1iynA	295	55.42	a.93.1.1	90722
3broA	141	55.60		
1lliA	92	55.85	a.35.1.2	17025
3c1aA	315	56.68		
1vhtA	218	57.02	c.37.1.1	100700
1th8A	145	59.80	d.122.1.3	106908
1vj7A	393	61.27	a.211.1.1,d.218.1.8	100801,100802
2jspA	87	61.42		
2vjvA	159	61.57		
2breA	219	62.67	d.122.1.1	128994
2cohA	202	63.19	a.4.5.4,b.82.3.2	130677,130678
1nox	205	63.24		
3bjaA	139	66.31		
1vjfA	180	69.64	d.116.1.1	100809
1fs1B	141	70.64	a.157.1.1,d.42.1.1	19252,38664
2frhA	127	71.15	a.4.5.28	133988
2fbiA	142	72.62	a.4.5.28	133246
1bd0A	388	73.19	b.49.2.2,c.1.6.1	26480,28642
1s3jA	155	78.53	a.4.5.28	98437
1nstA	325	82.03	c.37.1.5	31951
1dxkA	227	82.41	d.157.1.1	42036
2ho3A	325	83.98		
2ejhA	255	84.26		
1gcuA	295	85.71	c.2.1.3,d.81.1.4	30063,39978
2gxgA	146	85.72		
1cztA	160	86.28	b.18.1.2	23715
1ufmA	84	89.65	a.4.5.47	107816