# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.79e-05	d.98.1.1	67267
2g2uB	165	2.00e-05	d.98.1.1	134541
2fyxA	143	1.645	d.58.57.1	134411
2fbhA	146	3.499	a.4.5.28	133245
2o8xA	70	6.210		
2f5gA	133	7.395	d.58.57.1	132991
2a6mA	155	8.719	d.58.57.1	126287
2h36X	112	8.743		
2hr3A	147	11.01	a.4.5.28	136678
1tygB	87	13.97	d.15.3.2	107455
1vmbA	140	14.47	d.58.14.1	113672
1r69	69	15.67		
1mt6A	280	16.22	b.76.2.1,b.85.7.1	79446,79447
2bnmA	198	17.45	a.35.1.3,b.82.1.10	128835,128836
2rdpA	150	17.97		
2h27A	73	19.23	a.4.13.2	135993
2ismA	352	19.26		
2ef8A	84	20.03		
1adrA	76	22.30	a.35.1.2	17042
2pexA	153	22.74		
2q88A	257	24.17		
1lnwA	147	25.63	a.4.5.28	78104
3boqA	160	26.21		
3bemA	218	26.23		
2ppxA	99	27.91		
1lj9A	144	28.29	a.4.5.28	78035
1utxA	66	28.60	a.35.1.3	108034
2fa5A	162	28.73		
2vjvA	159	33.82		
2nrrA	159	36.26		
2b5aA	77	36.81	a.35.1.3	127882
1h67A	108	36.86	a.40.1.1	65643
1zud2	66	36.90		
2fa1A	160	37.31	d.190.1.2	133182
2iwxA	214	38.10	d.122.1.1	137758
3bddA	142	41.13		
1jkoC	52	41.35	a.4.1.2	66809
1lliA	92	43.46	a.35.1.2	17025
1vfrA	218	47.19	d.90.1.1	40247
2hpaA	342	48.49	c.60.1.2	33985
3broA	141	50.25		
2fbiA	142	50.32	a.4.5.28	133246
1nox	205	50.50		
1yqgA	263	52.22		
1vjfA	180	52.24	d.116.1.1	100809
2jspA	87	54.03		
1lmb3	92	55.81		
3bs3A	76	55.89		
1r69A	69	56.27	a.35.1.2	17028
2nnnA	140	57.17		
1vkiA	181	57.64	d.116.1.1	108664
2i5gA	325	58.05		
1or7A	194	58.56	a.4.13.2,a.177.1.1	87332,87333
1mqoA	227	59.11	d.157.1.1	103846
1qtnA	164	61.35	c.17.1.1	30999
1fs1B	141	63.62	a.157.1.1,d.42.1.1	19252,38664
2bv6A	142	65.64		
3b40A	417	65.71		
2o4uX	334	66.56		
2bf5A	98	66.82	d.137.1.1	128405
3ceaA	346	67.70		
3bjaA	139	68.65		
2ntiA	249	68.94		
2gxgA	146	69.90		
2cro	71	71.78		
1fqvD	149	72.74	a.157.1.1,d.42.1.1	19263,38667
2qwwA	154	75.00		
2nyxA	168	79.11		
1vhtA	218	79.16	c.37.1.1	100700
1vj7A	393	79.88	a.211.1.1,d.218.1.8	100801,100802
2e01A	457	81.20		
2breA	219	81.82	d.122.1.1	128994
3b7hA	78	82.99		
2ejhA	255	83.29		
3c1aA	315	84.10		
2iskA	230	85.79		
1ufmA	84	86.09	a.4.5.47	107816