# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	7.92e-06	d.98.1.1	67267
2g2uB	165	1.02e-05	d.98.1.1	134541
2fyxA	143	1.805	d.58.57.1	134411
2o8xA	70	3.635		
2fbhA	146	4.562	a.4.5.28	133245
1vmbA	140	7.010	d.58.14.1	113672
2a6mA	155	7.757	d.58.57.1	126287
2f5gA	133	10.51	d.58.57.1	132991
2hr3A	147	10.61	a.4.5.28	136678
1tygB	87	10.81	d.15.3.2	107455
2h36X	112	12.56		
1r69	69	13.00		
2h27A	73	15.12	a.4.13.2	135993
1adrA	76	15.15	a.35.1.2	17042
1mt6A	280	21.73	b.76.2.1,b.85.7.1	79446,79447
2bnmA	198	22.65	a.35.1.3,b.82.1.10	128835,128836
2ppxA	99	23.29		
2breA	219	24.41	d.122.1.1	128994
2iwxA	214	26.00	d.122.1.1	137758
2bv6A	142	26.73		
1lj9A	144	27.09	a.4.5.28	78035
3boqA	160	28.96		
2ef8A	84	30.03		
1utxA	66	30.07	a.35.1.3	108034
1mqoA	227	31.05	d.157.1.1	103846
2q88A	257	33.58		
2nrrA	159	34.25		
2rdpA	150	34.78		
1cp3A	277	35.15	c.17.1.1	30992
2pexA	153	35.69		
3bddA	142	35.89		
3bemA	218	36.67		
2fa1A	160	37.75	d.190.1.2	133182
1yqgA	263	38.51		
2b5aA	77	41.92	a.35.1.3	127882
1lmb3	92	42.12		
1z2nX	324	42.28		
2ismA	352	42.95		
1vfrA	218	45.17	d.90.1.1	40247
2iorA	235	45.75		
2ikkA	173	46.71		
1zud2	66	47.28		
2fa5A	162	49.22		
2jspA	87	50.10		
1or7A	194	50.96	a.4.13.2,a.177.1.1	87332,87333
1r69A	69	51.25	a.35.1.2	17028
3broA	141	52.17		
1th8A	145	52.35	d.122.1.3	106908
1lliA	92	52.69	a.35.1.2	17025
2ejhA	255	54.35		
2vjvA	159	55.10		
2o4uX	334	59.68		
1qtnA	164	59.81	c.17.1.1	30999
1jkoC	52	59.85	a.4.1.2	66809
1h67A	108	60.10	a.40.1.1	65643
2frhA	127	60.70	a.4.5.28	133988
1vhtA	218	61.92	c.37.1.1	100700
2glxA	332	62.74		
3ceaA	346	63.02		
1lnwA	147	64.15	a.4.5.28	78104
1dxkA	227	65.07	d.157.1.1	42036
3b7hA	78	66.78		
2cro	71	67.13		
1fs1B	141	69.64	a.157.1.1,d.42.1.1	19252,38664
1nox	205	70.14		
2fbiA	142	71.68	a.4.5.28	133246
2gxgA	146	72.86		
2i5gA	325	73.58		
3bs3A	76	74.84		
1ufmA	84	75.24	a.4.5.47	107816
3c1aA	315	76.42		
2gauA	232	77.50	a.4.5.4,b.82.3.2	134894,134895
2d5vA	164	78.39		
2e01A	457	81.16		
2zcwA	202	81.72		
1vjfA	180	82.26	d.116.1.1	100809
2izzA	322	82.69		
1gcuA	295	83.09	c.2.1.3,d.81.1.4	30063,39978
1y7yA	74	84.15	a.35.1.3	122729
2hpaA	342	84.75	c.60.1.2	33985
2graA	277	87.40		
2bf5A	98	87.71	d.137.1.1	128405
1fqvD	149	88.75	a.157.1.1,d.42.1.1	19263,38667
2f1sA	186	89.30		
2elcA	329	89.65