# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	5.55e-06	d.98.1.1	134541
1jtgB	165	8.03e-06	d.98.1.1	67267
2fyxA	143	2.651	d.58.57.1	134411
2a6mA	155	3.291	d.58.57.1	126287
2h36X	112	7.401		
2rdpA	150	8.333		
2o8xA	70	8.478		
2hr3A	147	9.014	a.4.5.28	136678
2vjvA	159	13.29		
1mqoA	227	13.79	d.157.1.1	103846
2fbhA	146	14.28	a.4.5.28	133245
3bddA	142	15.19		
3broA	141	23.27		
2nx9A	464	26.94		
3bjaA	139	27.07		
1dxkA	227	29.80	d.157.1.1	42036
2iaiA	230	31.12		
1r1tA	122	31.56	a.4.5.5	104769
2f5gA	133	34.52	d.58.57.1	132991
6paxA	133	34.97	a.4.1.5,a.4.1.5	64758,64759
2cxyA	125	36.87		
2h27A	73	39.34	a.4.13.2	135993
1smtA	122	39.82	a.4.5.5	16109
2bv6A	142	40.34		
2j41A	207	40.52		
1r69	69	41.68		
1qtnA	164	44.21	c.17.1.1	30999
2frhA	127	45.57	a.4.5.28	133988
2iygA	124	46.30		
2bnmA	198	48.28	a.35.1.3,b.82.1.10	128835,128836
1jkoC	52	55.46	a.4.1.2	66809
2j6bA	109	55.59	d.321.1.1	138078
2gmqA	118	55.76		
1zkpA	268	56.77	d.157.1.9	125205
2ef8A	84	56.80		
2nyxA	168	57.66		
3bemA	218	57.81		
1pufA	77	60.02	a.4.1.1	95131
3crjA	199	60.41		
1ic8A	194	62.82	a.4.1.1,a.35.1.1	76740,76741
2qtqA	213	64.39		
1vhtA	218	65.53	c.37.1.1	100700
2a2cA	478	68.07		
1octC	156	69.34	a.4.1.1,a.35.1.1	15991,17017
1lliA	92	72.77	a.35.1.2	17025
2ikkA	173	75.49		
2pexA	153	80.00		
2fbiA	142	80.14	a.4.5.28	133246
2ismA	352	80.56		
3cdhA	155	81.36		
2h0uA	217	83.55		
2an9A	207	83.72	c.37.1.1	127037
2dafA	118	84.38		
2sttA	96	84.76	a.4.5.21	16163
3c9qA	205	85.02		
1th8A	145	85.03	d.122.1.3	106908
1z6gA	218	86.66		
2q1zA	184	89.75