# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	0.000134	d.98.1.1	67267
2g2uB	165	0.000155	d.98.1.1	134541
2fyxA	143	4.120	d.58.57.1	134411
2hr3A	147	5.850	a.4.5.28	136678
2fbhA	146	7.150	a.4.5.28	133245
2bv6A	142	7.424		
2o8xA	70	8.683		
2a6mA	155	14.46	d.58.57.1	126287
3boqA	160	14.77		
2h36X	112	15.05		
3broA	141	15.39		
3bddA	142	17.55		
2rdpA	150	20.91		
2gxgA	146	24.00		
2f5gA	133	24.52	d.58.57.1	132991
2vjvA	159	30.30		
2pexA	153	31.02		
1vmbA	140	34.61	d.58.14.1	113672
2fbkA	181	34.78	a.4.5.28	133247
3bjaA	139	35.04		
2h27A	73	35.15	a.4.13.2	135993
2ef8A	84	38.21		
1lj9A	144	38.57	a.4.5.28	78035
2fbiA	142	42.06	a.4.5.28	133246
1r69	69	47.47		
2bnmA	198	47.75	a.35.1.3,b.82.1.10	128835,128836
1jkoC	52	51.61	a.4.1.2	66809
1z91A	147	55.34	a.4.5.28	124736
1lnwA	147	56.78	a.4.5.28	78104
2nnnA	140	56.95		
2cxyA	125	60.25		
1mqoA	227	60.97	d.157.1.1	103846
2nyxA	168	62.97		
1th8A	145	64.34	d.122.1.3	106908
2frhA	127	66.42	a.4.5.28	133988
3bj6A	152	69.36		
2fa5A	162	72.96		
1xipA	388	73.66	b.69.14.1	115360
1jgsA	138	73.88	a.4.5.28	66683
1adrA	76	75.30	a.35.1.2	17042
2amyA	246	78.20	c.108.1.10	127026
1s3jA	155	78.74	a.4.5.28	98437
1r1tA	122	78.83	a.4.5.5	104769
6paxA	133	79.28	a.4.1.5,a.4.1.5	64758,64759
2b5aA	77	85.32	a.35.1.3	127882
2h0uA	217	85.53		
2qwwA	154	87.05		
1smtA	122	88.22	a.4.5.5	16109