# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.54e-05	d.98.1.1	134541
1jtgB	165	2.51e-05	d.98.1.1	67267
1wdvA	152	8.311	d.116.1.1	114539
1l3kA	196	9.374	d.58.7.1,d.58.7.1	73539,73540
3sxlA	184	14.09	d.58.7.1,d.58.7.1	39173,39174
2a6cA	83	14.54	a.35.1.13	126236
2o38A	120	15.34		
2dofA	85	16.50		
1repC	251	20.44	a.4.5.10,a.4.5.10	16125,16126
1r69	69	22.61		
2cro	71	22.94		
1s6lA	212	22.98		
3bs3A	76	23.72		
2uzcA	88	25.73		
1cvjA	190	28.01	d.58.7.1,d.58.7.1	39191,39192
2pktA	91	28.56		
3b7hA	78	28.87		
1lnsA	763	29.91	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103
1yo5C	97	33.37	a.4.5.21	123768
1ha1	184	34.95		
2uzhA	165	36.12		
1gifA	115	37.47	d.80.1.3	39837
1dzfA	215	37.71	c.52.3.1,d.78.1.1	33344,39753
2b5aA	77	37.98	a.35.1.3	127882
1gln	468	38.57		
1y7yA	74	43.49	a.35.1.3	122729
1vkkA	154	43.51	d.109.1.2	108669
1mzbA	136	46.08	a.4.5.42	91497
1r69A	69	47.58	a.35.1.2	17028
2h36X	112	47.62		
2r00A	336	50.83		
1jkoC	52	53.82	a.4.1.2	66809
1whbA	157	53.87	c.46.1.4	114639
2croA	71	54.13	a.35.1.2	17038
3c3dA	311	54.71		
2z0xA	158	55.32		
1bh5A	183	56.18	d.32.1.1	38476
1sgvA	316	56.70	b.122.1.1,d.265.1.2	98858,98859
2v75A	104	58.36		
1oj8A	105	58.82	d.5.1.1	103975
1hkqA	132	60.93	a.4.5.10	83555
1j09A	468	63.82	a.97.1.1,c.26.1.1	77025,77026
1yb3A	175	64.75	d.296.1.2	122869
2qfjA	216	65.35		
2ooiA	162	66.06		
1cvjB	190	68.69	d.58.7.1,d.58.7.1	39193,39194
2ewtA	71	69.04		
1p27B	106	72.15	d.58.7.1	93908
1z2mA	155	73.45	d.15.1.1,d.15.1.1	124387,124388
1h2vZ	156	73.95	d.58.7.1	76595
2f7lA	455	75.20		
1utxA	66	76.59	a.35.1.3	108034
1vixA	420	76.96	c.56.5.4,d.58.19.1	100777,100778
1lliA	92	78.63	a.35.1.2	17025
1y14B	171	79.88	b.40.4.5,d.230.1.1	116323,116324
1ncx	162	81.53		
1cjgA	62	85.06	a.35.1.5	17112
1fnoA	417	85.94	d.58.19.1,c.56.5.4	70145,75841
1dgsA	667	86.87	a.60.2.2,b.40.4.6,d.142.2.2	17963,25365,41581
1awcA	110	87.44	a.4.5.21	16167
2eucA	130	88.39	a.249.1.1	132382
2qqzA	126	88.74		
1lldA	319	89.70	c.2.1.5,d.162.1.1	30177,42144
1gvjA	146	89.80	a.4.5.21	90525