# List of top-scoring protein chains for T0399.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.38e-07	d.98.1.1	134541
1s0wC	165	1.86e-07	d.98.1.1	98311
1xxmC	165	2.86e-07		
2pxgA	118	0.03035		
1h6vA	499	4.373	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2iorA	235	11.23		
2j3nA	519	11.59		
2cfyA	521	11.84		
1y4uA	559	12.01		
2ioqA	624	12.30		
1zkqA	517	15.76		
1knwA	425	20.66	b.49.2.3,c.1.6.1	90969,90970
1u59A	287	45.04	d.144.1.7	107681
1hpuA	525	47.77	d.114.1.1,d.159.1.2	70979,70980
2coiA	386	47.87		
1hp1A	516	47.93	d.114.1.1,d.159.1.2	70976,70977
1ushA	550	53.18	d.114.1.1,d.159.1.2	40923,42079
2oqkA	117	60.80		
1oidA	532	64.31	d.114.1.1,d.159.1.2	103952,103953
1oi8A	532	70.66	d.114.1.1,d.159.1.2	103942,103943
2ozoA	613	73.11		
1gq6A	313	74.24	c.42.1.1	70341
1qksA	567	87.02	a.3.1.2,b.70.2.1	15951,27710
1d7qA	143	88.70	b.40.4.5	25331