# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.00e-10	d.98.1.1	67267
2g2uB	165	1.16e-10	d.98.1.1	134541
1u6eA	335	13.30	c.95.1.2,c.95.1.2	119568,119569
2o8xA	70	19.01		
2h27A	73	20.32	a.4.13.2	135993
2oxgB	124	23.02		
2iskA	230	24.18		
1j3wA	163	24.25	d.110.7.1	90833
1vd6A	224	25.50	c.1.18.3	119991
1vjfA	180	26.23	d.116.1.1	100809
2fbhA	146	30.12	a.4.5.28	133245
1z82A	335	34.33		
1wdcB	156	35.79	a.39.1.5	17302
1f5vA	240	37.27	d.90.1.1	40255
1t6sA	162	39.12	a.4.5.60,a.4.5.60	112271,112272
1gq6A	313	40.32	c.42.1.1	70341
1vs0A	310	40.63		
2hmaA	376	41.54		
2qdrA	303	44.65		
2c8mA	262	44.88		
2pliA	91	48.17		
2grjA	192	48.46		
1ku3A	73	49.04	a.4.13.2	73000
2b67A	204	49.93	d.90.1.1	127970
1ywqA	200	52.03	d.90.1.1	124162
3bemA	218	53.48		
2a0mA	316	55.13	c.42.1.1	125960
1lc0A	294	56.20	c.2.1.3,d.81.1.4	73823,73824
2guzA	71	57.24		
2freA	200	60.32	d.90.1.1	133985
2gb4A	252	61.26		
2bzeA	153	63.97		
1vhtA	218	64.48	c.37.1.1	100700
2ho3A	325	66.99		
2ja9A	175	68.02		
1wrjA	156	68.19		
2ghpA	292	70.64	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1oo0B	110	72.81	d.58.7.1	87183
1rw1A	114	73.28	c.47.1.12	111945
2cx5A	158	74.59		
2pttB	112	75.63		
2f6rA	281	78.56		
2r01A	210	80.89		
1o1zA	234	81.68	c.1.18.3	86555
2h36X	112	81.96		
1dliA	402	81.99	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2pywA	420	82.84		
1ta8A	332	82.94	d.142.2.2	112375
3c7jA	237	84.65		
1tu3F	79	85.08	h.1.27.2	112644
1l3kA	196	86.81	d.58.7.1,d.58.7.1	73539,73540
1noxA	205	87.01	d.90.1.1	40242
2q88A	257	87.99		
2cfmA	561	88.19		
2q6mA	212	88.46