# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	7.27e-11	d.98.1.1	67267
2g2uB	165	7.37e-11	d.98.1.1	134541
1vd6A	224	17.85	c.1.18.3	119991
1wdcB	156	19.39	a.39.1.5	17302
2o8xA	70	27.85		
2b67A	204	28.83	d.90.1.1	127970
2oxgB	124	28.84		
1vs0A	310	29.13		
1t6sA	162	29.23	a.4.5.60,a.4.5.60	112271,112272
2iskA	230	29.42		
2h27A	73	31.13	a.4.13.2	135993
1u6eA	335	31.39	c.95.1.2,c.95.1.2	119568,119569
1vjfA	180	34.43	d.116.1.1	100809
2pttB	112	35.30		
1j3wA	163	37.35	d.110.7.1	90833
2h36X	112	38.82		
3bemA	218	40.57		
1ywqA	200	42.07	d.90.1.1	124162
2fbhA	146	42.21	a.4.5.28	133245
1o1zA	234	42.22	c.1.18.3	86555
1ku3A	73	42.69	a.4.13.2	73000
1l3kA	196	43.36	d.58.7.1,d.58.7.1	73539,73540
2qdrA	303	44.88		
1lc0A	294	46.06	c.2.1.3,d.81.1.4	73823,73824
2ho3A	325	46.60		
1dliA	402	47.85	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
1mpyA	307	48.63	d.32.1.3,d.32.1.3	38508,38509
2bzeA	153	50.20		
2freA	200	52.57	d.90.1.1	133985
1oo0B	110	52.67	d.58.7.1	87183
1tiwA	602	57.45	a.176.1.1,c.1.23.2	112430,112431
1ta8A	332	59.21	d.142.2.2	112375
2pliA	91	59.56		
1noxA	205	59.75	d.90.1.1	40242
2r01A	210	61.90		
1f5vA	240	62.48	d.90.1.1	40255
2hayA	224	66.56		
1rw1A	114	67.18	c.47.1.12	111945
2q6mA	212	68.14		
1tu3F	79	69.11	h.1.27.2	112644
1tltA	319	69.39	c.2.1.3,d.81.1.5	107135,107136
2o4uX	334	78.44		
2cfmA	561	78.68		
2z99A	219	79.60		
2ijcA	145	82.88	a.152.1.3	137465
1luzA	88	84.44	b.40.4.5	74271
1h6dA	433	86.66	c.2.1.3,d.81.1.5	65656,65657
2guzA	71	86.88		
1fxlA	167	88.38	d.58.7.1,d.58.7.1	39183,39184
1z82A	335	88.68		
1wnaA	131	88.75	d.319.1.1	121091
2qhkA	174	89.44