# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 5.86e-13 d.98.1.1 134541 1jtgB 165 7.95e-13 d.98.1.1 67267 2cx5A 158 7.676 2h27A 73 10.28 a.4.13.2 135993 1wdcB 156 11.05 a.39.1.5 17302 1wdvA 152 11.50 d.116.1.1 114539 2ho3A 325 14.64 1vjfA 180 16.01 d.116.1.1 100809 2o8xA 70 17.18 2dxaA 166 18.63 2oxgB 124 18.95 1rxwA 336 19.29 a.60.7.1,c.120.1.2 98059,98060 2fbhA 146 19.53 a.4.5.28 133245 1z82A 335 19.78 1luzA 88 19.82 b.40.4.5 74271 2z0xA 158 20.78 2iskA 230 20.91 1t95A 240 23.24 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2b67A 204 23.35 d.90.1.1 127970 1vd6A 224 24.33 c.1.18.3 119991 2ef8A 84 24.50 1adrA 76 24.70 a.35.1.2 17042 1a76 326 27.49 1xgsA 295 27.97 a.4.5.25,d.127.1.1 16216,41153 2r01A 210 29.04 1p9qC 256 29.20 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 3bemA 218 29.67 1wy2A 351 30.25 2croA 71 30.69 a.35.1.2 17038 1zh8A 340 31.24 c.2.1.3,d.81.1.5 125077,125078 2freA 200 34.30 d.90.1.1 133985 2bzeA 153 34.70 1r69A 69 36.27 a.35.1.2 17028 1ku3A 73 36.70 a.4.13.2 73000 1utxA 66 37.35 a.35.1.3 108034 1o1zA 234 37.89 c.1.18.3 86555 2cro 71 41.21 2r1fA 270 41.21 1vs0A 310 42.00 1r69 69 42.44 1v4sA 455 42.70 c.55.1.3,c.55.1.3 100309,100310 1t6sA 162 42.93 a.4.5.60,a.4.5.60 112271,112272 2ex2A 458 44.52 e.3.1.3 132497 1wrjA 156 44.68 1dbxA 158 46.29 d.116.1.1 40928 1lc0A 294 46.90 c.2.1.3,d.81.1.4 73823,73824 1y7yA 74 47.07 a.35.1.3 122729 1noxA 205 47.52 d.90.1.1 40242 1rw1A 114 52.80 c.47.1.12 111945 2h36X 112 53.28 1zud2 66 53.40 1ta8A 332 54.48 d.142.2.2 112375 1c1dA 355 55.99 c.2.1.7,c.58.1.1 30270,33918 2cr5A 109 57.41 d.15.1.2 130733 1qlwA 328 58.40 c.69.1.15 34722 1behA 187 64.96 b.17.1.1 23700 2bh1X 96 66.18 1j3wA 163 69.97 d.110.7.1 90833 2a0mA 316 70.76 c.42.1.1 125960 2guzA 71 72.12 3bn8A 128 73.56 2cx1A 187 74.35 b.122.1.1,d.17.6.4 130967,130968 2db9A 149 74.44 1zl0A 311 74.64 c.8.10.1,c.23.16.7 125231,125232 2b5aA 77 77.05 a.35.1.3 127882 2q88A 257 77.79 1ywqA 200 78.05 d.90.1.1 124162 1vz0A 230 78.97 a.4.14.1,d.268.1.1 108929,108930 1fn9A 365 80.93 d.196.1.1 59894 2hy5A 130 81.02 c.114.1.1 136865 1ojjA 402 83.49 b.29.1.10 93130 1ztuA 341 84.66 1mtpA 323 84.94 e.1.1.1 85107 2i3oA 516 87.00 d.153.1.6 137027 1f5vA 240 87.42 d.90.1.1 40255 1vhtA 218 89.27 c.37.1.1 100700 1qxyA 252 89.78 d.127.1.1 96565