# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	3.95e-12	d.98.1.1	134541
1jtgB	165	7.47e-12	d.98.1.1	67267
1u6eA	335	6.906	c.95.1.2,c.95.1.2	119568,119569
1dliA	402	8.339	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2o8xA	70	14.05		
1j3wA	163	14.57	d.110.7.1	90833
2a0mA	316	17.32	c.42.1.1	125960
2h27A	73	17.63	a.4.13.2	135993
1gq6A	313	19.45	c.42.1.1	70341
2grjA	192	19.75		
2oxgB	124	19.89		
1vd6A	224	19.91	c.1.18.3	119991
2ho3A	325	23.29		
1z82A	335	23.75		
2h36X	112	27.92		
2qdrA	303	31.24		
1wdcB	156	31.52	a.39.1.5	17302
2f6rA	281	34.64		
2cx5A	158	36.14		
1a8yA	367	36.31	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2hmaA	376	36.69		
1rw1A	114	36.99	c.47.1.12	111945
2fbhA	146	38.02	a.4.5.28	133245
1t6sA	162	39.93	a.4.5.60,a.4.5.60	112271,112272
2cfmA	561	40.92		
1ywqA	200	42.99	d.90.1.1	124162
1vs0A	310	43.45		
2ja9A	175	44.78		
2gb4A	252	47.52		
2ef5A	290	47.76		
2pliA	91	49.14		
1luzA	88	49.67	b.40.4.5	74271
2z0xA	158	50.32		
1tu3F	79	52.28	h.1.27.2	112644
1vjfA	180	53.99	d.116.1.1	100809
1zzkA	82	54.27	d.51.1.1	125909
1z6fA	363	56.76	b.105.1.1,e.3.1.1	124520,124521
1f5vA	240	57.47	d.90.1.1	40255
2freA	200	58.24	d.90.1.1	133985
1lc0A	294	58.46	c.2.1.3,d.81.1.4	73823,73824
2b67A	204	63.58	d.90.1.1	127970
1tltA	319	64.72	c.2.1.3,d.81.1.5	107135,107136
2pttB	112	66.05		
2cx1A	187	66.30	b.122.1.1,d.17.6.4	130967,130968
2dxaA	166	66.78		
1y8aA	332	67.19		
1hnjA	317	68.94	c.95.1.2,c.95.1.2	35969,35970
2glxA	332	69.15		
1ku3A	73	70.51	a.4.13.2	73000
3bemA	218	71.10		
2uyoA	310	73.38		
2guzA	71	74.45		
2q0xA	335	76.18		
2hy5A	130	77.88	c.114.1.1	136865
1o1zA	234	78.41	c.1.18.3	86555
2q88A	257	78.65		
1dbxA	158	79.10	d.116.1.1	40928
3c7jA	237	79.31		
1noxA	205	79.47	d.90.1.1	40242
2q6mA	212	79.60		
2iskA	230	82.56		
1wdvA	152	87.30	d.116.1.1	114539
1ztuA	341	88.11		
2bt2A	161	88.19		
2jerA	389	88.35		
2ijcA	145	89.86	a.152.1.3	137465