# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	9.28e-13	d.98.1.1	134541
1jtgB	165	1.29e-12	d.98.1.1	67267
1u6eA	335	3.849	c.95.1.2,c.95.1.2	119568,119569
2o8xA	70	11.03		
1dliA	402	12.13	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
1gq6A	313	13.77	c.42.1.1	70341
2h27A	73	14.16	a.4.13.2	135993
2a0mA	316	16.39	c.42.1.1	125960
2grjA	192	18.73		
2oxgB	124	21.31		
2qdrA	303	21.45		
2ja9A	175	21.67		
2fbhA	146	22.32	a.4.5.28	133245
1z82A	335	22.61		
1wdcB	156	24.17	a.39.1.5	17302
1j3wA	163	25.43	d.110.7.1	90833
1rw1A	114	25.98	c.47.1.12	111945
2ho3A	325	27.39		
1vd6A	224	27.70	c.1.18.3	119991
2f6rA	281	28.15		
2hmaA	376	31.99		
1f5vA	240	34.65	d.90.1.1	40255
3c7jA	237	35.23		
1ywqA	200	36.09	d.90.1.1	124162
2ef5A	290	36.35		
2cx5A	158	38.85		
1tiwA	602	39.30	a.176.1.1,c.1.23.2	112430,112431
1zzkA	82	42.57	d.51.1.1	125909
2pttB	112	43.85		
1t6sA	162	43.94	a.4.5.60,a.4.5.60	112271,112272
2q6mA	212	45.48		
1a8yA	367	45.82	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2qhkA	174	46.62		
1noxA	205	47.31	d.90.1.1	40242
3bemA	218	48.27		
2b67A	204	48.78	d.90.1.1	127970
2z0xA	158	49.41		
2iskA	230	49.69		
2freA	200	50.75	d.90.1.1	133985
2gb4A	252	52.84		
1tu3F	79	53.45	h.1.27.2	112644
1lc0A	294	58.75	c.2.1.3,d.81.1.4	73823,73824
1vhtA	218	61.09	c.37.1.1	100700
2pliA	91	63.67		
1ku3A	73	64.37	a.4.13.2	73000
2dxaA	166	64.57		
1hnjA	317	65.68	c.95.1.2,c.95.1.2	35969,35970
2cx1A	187	66.02	b.122.1.1,d.17.6.4	130967,130968
2p2rA	76	66.17		
2uyoA	310	66.60		
1vjfA	180	66.97	d.116.1.1	100809
1dbxA	158	68.03	d.116.1.1	40928
1nox	205	68.56		
2guzA	71	68.96		
1qlwA	328	71.18	c.69.1.15	34722
2glxA	332	73.14		
2q88A	257	76.24		
2veoA	441	78.80		
1ykiA	217	79.26	d.90.1.1	123520
1tltA	319	79.30	c.2.1.3,d.81.1.5	107135,107136
1y8aA	332	83.49		
2bt2A	161	85.56		
1zchA	255	85.69	d.90.1.1	124908
2r7dA	469	85.95		
2cfmA	561	88.57		
1wdvA	152	89.35	d.116.1.1	114539