# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	4.58e-10	d.98.1.1	134541
1jtgB	165	6.73e-10	d.98.1.1	67267
2o8xA	70	14.81		
2h27A	73	16.60	a.4.13.2	135993
2h36X	112	18.89		
1wdcB	156	20.86	a.39.1.5	17302
1nu4A	97	21.73	d.58.7.1	80731
1l3kA	196	23.03	d.58.7.1,d.58.7.1	73539,73540
1wdvA	152	24.60	d.116.1.1	114539
2oxgB	124	24.91		
1t6sA	162	28.81	a.4.5.60,a.4.5.60	112271,112272
1ku3A	73	32.19	a.4.13.2	73000
2grjA	192	33.39		
2fbhA	146	42.94	a.4.5.28	133245
1vz0A	230	43.45	a.4.14.1,d.268.1.1	108929,108930
1a9nB	96	46.30	d.58.7.1	39165
1kqqA	139	47.66	a.4.3.1	72885
2nscA	109	50.05		
1rw1A	114	50.92	c.47.1.12	111945
3boqA	160	51.40		
1yk3A	210	52.17	d.108.1.1	123493
2bt2A	161	54.34		
2b5aA	77	54.46	a.35.1.3	127882
3c7jA	237	57.84		
2z0tA	109	58.60		
2ef8A	84	59.20		
2cro	71	59.27		
2croA	71	61.02	a.35.1.2	17038
1t95A	240	65.46	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2f6rA	281	68.50		
2pv7A	298	68.86		
1gq6A	313	69.21	c.42.1.1	70341
1mai	131	69.31		
2z99A	219	69.95		
1maiA	131	70.37	b.55.1.1	26951
2p2rA	76	74.52		
1adrA	76	75.81	a.35.1.2	17042
1vjfA	180	77.44	d.116.1.1	100809
2go9A	161	79.44		
1wlzA	105	80.09	a.39.1.7	121024
2bbrA	195	80.42		
2h09A	155	80.75		
3broA	141	81.01		
2o38A	120	81.18		
2z0xA	158	81.31		
2pbyA	308	82.82		
2dxaA	166	83.36		
1vkiA	181	83.48	d.116.1.1	108664
1zzkA	82	84.52	d.51.1.1	125909
2guzA	71	84.65		
2q6mA	212	88.51		
1yvwA	115	89.96	a.204.1.4	124122